Evidence map›Paper›PMID 41333434›Full record

ArticleResearch square2025

FORCE: FORward modeling for Complex microstructure Estimation.

Atharva Jaydeep Shah, Rafael Neto Henriques, Alonso Ramirez-Manzanares, Patryk Filipiak, Steven Baete, Kaustav Deka, Maharshi Gor, Serge Koudoro, Eleftherios Garyfallidis

Abstract readPreprint
In one paragraph

Article in Research square, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Atharva Jaydeep ShahIndiana University, Bloomington, Indiana, USA.
Rafael Neto HenriquesInstituto de Biofísica e Engenharia Biomédica, Faculdade de Ciências da Universidade de Lisboa, Lisbon, Portugal.ORCID https://orcid.org/0000-0002-3891-8189
Alonso Ramirez-ManzanaresCentro de Investigación en Matemáticas A.C. (CIMAT), Guanajuato, Mexico.
Patryk FilipiakCenter for Advanced Imaging Innovation and Research, NYU Langone Health, New York, USA.
Steven BaeteCenter for Advanced Imaging Innovation and Research, NYU Langone Health, New York, USA.ORCID https://orcid.org/0000-0003-3361-3789
Kaustav DekaIndiana University, Bloomington, Indiana, USA.
Maharshi GorIndiana University, Bloomington, Indiana, USA.
Serge KoudoroIndiana University, Bloomington, Indiana, USA.
Eleftherios GaryfallidisIndiana University, Bloomington, Indiana, USA.

Funding

Brain networks in mouse models of agingR01AG066184 · NIA · DUKE UNIVERSITY · PI BADEA, ALEXANDRA · 2019 to 2023
$3.8M
CRCNS: Community-supported open-source software for computational neuroanatomyR01EB027585 · NIBIB · TRUSTEES OF INDIANA UNIVERSITY · PI Eleftherios Garyfallidis · 2018 to 2026
$2.6M
Cardiac photon counting CT and its application in studying interactions between Alzheimer's and heart diseaseRF1AG070149 · NIA · DUKE UNIVERSITY · PI BADEA, CRISTIAN T · 2021 to 2022
$2.1M
NIA NIH HHS R01 AG066184NIA NIH HHS RF1 AG070149NIBIB NIH HHS R01 EB027585
6 · The paper itself

Abstract

Diffusion Magnetic Resonance Imaging (dMRI) is a noninvasive modality that enables the study of brain tissue microstructure and the reconstruction of neural pathways. To achieve this, most reconstruction methods rely on inverse modeling techniques, which are often ill-posed and struggle to resolve shallow fiber crossings. Moreover, existing methods typically focus either on estimating fiber orientations or on deriving microstructural maps. As a result, obtaining a comprehensive characterization of tissue microstructure and architecture often requires combining multiple models, which is computationally demanding, potentially inconsistent due to model-specific assumptions and acquisition settings. This work introduces FORCE, a forward modeling paradigm that reframes how diffusion data is analyzed. Instead of inverting the measured signal, FORCE simulates a large set of biologically plausible intra-voxel fiber configurations and tissue compositions. It then identifies the best-matching simulation for each voxel by operating directly in the signal space. This unified framework simultaneously resolves low-angle fiber crossings, producing a large suite of microstructural maps and complete tissue segmentation in a single process. The proposed approach demonstrates robust performance across synthetic and real datasets from both human and mouse brains, encompassing multiple resolutions and acquisition types.

Indexed as

BiophysicsDiffusion-weighted MRI (dMRI)Fiber reconstructionForward modelingMicrostructure modelingSimulation-based

Identifiers

PMID41333434
PMCPMC12668119

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.