Evidence map›Paper›PMID 41332756›Full record

ArticlebioRxiv : the preprint server for biology2025

The Virtual Brain Ontology: A Digital Knowledge Framework for Reproducible Brain Network Modeling.

Leon Martin, Konstantin Bülau, Marius Pille, Rico Schmitt, Christoph Hüttl, Jil Meier, Halgurd Taher, Dionysios Perdikis, Michael Schirner, Leon Stefanovski and 1 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Leon MartinBerlin Institute of Health (BIH) at Charité - Universitätsmedizin Berlin, Charitéplatz 1, 10117, Berlin, Germany.ORCID 0000-0002-2599-0165
Konstantin BülauBerlin Institute of Health (BIH) at Charité - Universitätsmedizin Berlin, Charitéplatz 1, 10117, Berlin, Germany.ORCID 0000-0001-5266-7235
Marius PilleBerlin Institute of Health (BIH) at Charité - Universitätsmedizin Berlin, Charitéplatz 1, 10117, Berlin, Germany.ORCID 0009-0000-5087-8450
Rico SchmittBerlin Institute of Health (BIH) at Charité - Universitätsmedizin Berlin, Charitéplatz 1, 10117, Berlin, Germany.ORCID 0009-0001-3568-2203
Christoph HüttlBerlin Institute of Health (BIH) at Charité - Universitätsmedizin Berlin, Charitéplatz 1, 10117, Berlin, Germany.ORCID 0009-0003-4570-6832
Jil MeierBerlin Institute of Health (BIH) at Charité - Universitätsmedizin Berlin, Charitéplatz 1, 10117, Berlin, Germany.ORCID 0000-0001-5196-1627
Halgurd TaherBerlin Institute of Health (BIH) at Charité - Universitätsmedizin Berlin, Charitéplatz 1, 10117, Berlin, Germany.ORCID 0000-0003-3501-1466
Dionysios PerdikisBerlin Institute of Health (BIH) at Charité - Universitätsmedizin Berlin, Charitéplatz 1, 10117, Berlin, Germany.ORCID 0000-0003-0103-7094
Michael SchirnerBerlin Institute of Health (BIH) at Charité - Universitätsmedizin Berlin, Charitéplatz 1, 10117, Berlin, Germany.ORCID 0000-0001-8227-8476
Leon StefanovskiBerlin Institute of Health (BIH) at Charité - Universitätsmedizin Berlin, Charitéplatz 1, 10117, Berlin, Germany.ORCID 0000-0003-0197-2576
Petra RitterBerlin Institute of Health (BIH) at Charité - Universitätsmedizin Berlin, Charitéplatz 1, 10117, Berlin, Germany.ORCID 0000-0002-4643-4782

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Computational models of brain network dynamics offer mechanistic insights into brain function and disease, and are utilized for hypothesis generation, data interpretation, and the creation of personalized digital brain twins. However, results remain difficult to reproduce and compare because equations, parameters, networks, and numerical settings are reported inconsistently across the literature, and shared code is often not fully documented, standardized, or executable. We introduce

Indexed as

Brain SimulationFAIR researchKnowledge BaseKnowledge EngineeringOntologyScientific ComputingSemantic Code Generation Framework

Identifiers

PMID41332756
PMCPMC12667764

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.