Evidence map›Paper›PMID 41331045›Full record

ArticleThe Journal of antibiotics2026

The undiscovered natural product potential of Actinomycetes.

Andrés M Caraballo-Rodríguez, Andrés Cumsille, Sarolt Magyari, Maria Taboada-Alquerque, Bahar Behsaz, Tiago F Leão, Kirk Broders, Yasin El Abiead, Jason A Clement, Vincent Charron-Lamoureux and 8 more

Abstract read
In one paragraph

Article in The Journal of antibiotics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Cebulactam AMarine drugs · 2026
    Article
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Andrés M Caraballo-RodríguezSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA. acaraballorodriguez@health.ucsd.edu.ORCID http://orcid.org/0000-0001-5499-2728
Andrés CumsilleDepartamento de Química y Centro de Biotecnología Daniel Alkalay Lowitt, Laboratorio de Microbiología Molecular y Biotecnología Ambiental, Universidad Técnica Federico Santa María, Valparaíso, Chile.
Sarolt MagyariInstitute of Microbiology, Eidgenössische Technische Hochschule (ETH) Zürich, Zürich, Switzerland.
Maria Taboada-AlquerqueSchool of Pharmaceutical Sciences, University of Cartagena, Cartagena, Colombia.
Bahar BehsazCarnegie Melon University & Chemia Biosciences Inc, Pittsburgh, PA, USA.
Tiago F LeãoNúcleo de Bioensaios, Biossíntese e Ecofisiologia de Produtos Naturais (NuBBE), Institute of Chemistry, São Paulo State University (UNESP), Araraquara, São Paulo, Brazil.
Kirk BrodersUSDA, Agricultural Research Service, National Center for Agricultural Utilization Research, Mycotoxin Prevention and Applied Microbiology Research Unit, Peoria, IL, USA.
Yasin El AbieadSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA.ORCID http://orcid.org/0000-0003-4392-7706
Jason A ClementBaruch S. Blumberg Institute, Doylestown, PA, USA.
Vincent Charron-LamoureuxSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA.ORCID http://orcid.org/0000-0001-9440-7036
Simone ZuffaSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA.ORCID http://orcid.org/0000-0001-7237-3402
Louis-Félix NothiasInstitut de Chimie de Nice, Université Côte d'Azur CNRS, Nice, France.ORCID http://orcid.org/0000-0001-6711-6719
Mengzhou HuSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA.ORCID http://orcid.org/0000-0002-1571-8029
Christopher LeoneSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA.
Sarvar A KakhkhorovSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA.ORCID http://orcid.org/0000-0002-4698-8793
Beatriz CámaraDepartamento de Química y Centro de Biotecnología Daniel Alkalay Lowitt, Laboratorio de Microbiología Molecular y Biotecnología Ambiental, Universidad Técnica Federico Santa María, Valparaíso, Chile.
Hosein MohimaniCarnegie Melon University, Pittsburgh, PA, USA.
Pieter C DorresteinSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA.ORCID http://orcid.org/0000-0002-3003-1030

Funding

Unified Computation Tools for Natural Products ResearchR01GM107550 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI COTTRELL, GARRISON W, GERWICK, WILLIAM HENRY · 2013 to 2025
$8.2M
Collaborative Microbial Metabolite CenterU24DK133658 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PIETER C DORRESTEIN · 2022 to 2026
$2.9M
Discovering novel small molecule antibiotics from complex microbial communities by integrating computational mass spectrometry and metagenome miningDP2GM137413 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI MOHIMANI, HOSEIN · 2019 to 2019
$2.2M
Gordon and Betty Moore Foundation (Gordon E. and Betty I. Moore Foundation) GBMF12120NIDDK NIH HHS U24 DK133658NIGMS NIH HHS DP2 GM137413NIGMS NIH HHS R01 GM107550
6 · The paper itself

Abstract

Actinomycetes have been a cornerstone species for the discovery of bioactive natural products with applications in pharmacotherapy and biotechnology. To expand the experimental evidence of their biosynthetic potential, we collected liquid-chromatography mass spectrometry untargeted metabolomics data on 948 microbial strains, mostly from Actinomycetes. This resulted in nearly two million MS/MS spectra, with an annotation rate of 13.3% corresponding to 2352 annotated molecules. Despite the efforts to link biosynthetic gene clusters to known molecules, most remain uncharacterized. This highlights the need for metabolomic data to bridge the gap between genomic potential and metabolite production. Although many unannotated spectra might correspond to different ion forms of the same molecule, the large amount of unknown molecules present in these datasets indicates that a significant number of natural products remain to be discovered, even within one of the most thoroughly studied sets of organisms. We provide a large metabolomics dataset as a public resource for data mining of microbial molecules and highlight its value by demonstrating the detection of edapochelins, recently discovered non-ribosomal peptides.

Indexed as

ActinobacteriaBiological ProductsChromatography, LiquidMetabolomicsMultigene FamilyTandem Mass SpectrometryBiological Products

Identifiers

PMID41331045
PMCPMC12834688

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.