Evidence map›Paper›PMID 41330937›Full record

ArticleScientific data2025

Two high-quality genomes of Prototheca bovis strain SH08 and Prototheca ciferrii strain SH13.

Jian Guo, Yao Ming, Juan Chen, Yuyuan Xue, Yajuan Peng, Hui Zhu, Cizhong Jiang, Wenjuan Wu

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jian Guo *Department of Laboratory Medicine, Shanghai East Hospital, School of Life Sciences and Technology, Tongji University, Shanghai, 200120, China.
Yao Ming *BGI Genomics, Shenzhen, 518083, China.
Juan Chen *Department of Laboratory Medicine, Shanghai East Hospital, School of Life Sciences and Technology, Tongji University, Shanghai, 200120, China.
Yuyuan XueDepartment of Dermatology, Huashan Hospital, Fudan University, Shanghai, 200040, China.
Yajuan PengBGI Genomics, Shenzhen, 518083, China.
Hui ZhuBGI Genomics, Shenzhen, 518083, China.
Cizhong JiangDepartment of Laboratory Medicine, Shanghai East Hospital, School of Life Sciences and Technology, Tongji University, Shanghai, 200120, China. czjiang@tongji.edu.cn.ORCID http://orcid.org/0000-0001-5406-2360
Wenjuan WuDepartment of Laboratory Medicine, Shanghai East Hospital, School of Life Sciences and Technology, Tongji University, Shanghai, 200120, China. wwj1210@126.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Prototheca, one of the foremost causative agents responsible for opportunistic infections in both humans and animals. Despite the availability of several Prototheca genomes, the genomes of Prototheca bovis and Prototheca ciferrii have remained unsequenced. In this study, we report two high-quality genome assemblies for P. bovis strain SH08 and P. ciferrii strain SH13, representing two distinct species of the genus Prototheca. The final assembled genome sizes were 30.6 Mb for P. bovis SH08 and 32.7 Mb for P. ciferrii SH13, with contig N50 values of 1.19 Mb and 1.78 Mb, respectively. The repetitive sequences were identified in 14.79% and 14.24% of the assembled genomes, respectively. A total of 5,141 protein-coding genes were predicted for P. bovis SH08, while P. ciferrii SH13 contained 4,986 protein-coding genes. Functional annotation identified 97.28% and 99.16% of the genes in the genomes, respectively. These two novel high-quality genome assemblies represent valuable resources for advancing research in evolutionary biology, comparative genomics, pathogenicity assessment, diagnostic strategies, and therapeutic interventions in protothecosis.

Indexed as

ProtothecaGenomeMolecular Sequence AnnotationRepetitive Sequences, Nucleic Acid

Identifiers

PMID41330937
PMCPMC12800329

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.