Evidence map›Paper›PMID 41329604›Full record

ArticleeLife2025

MorphoNet 2.0: An innovative approach for qualitative assessment and segmentation curation of large-scale 3D time-lapse imaging datasets.

Benjamin Gallean, Tao Laurent, Kilian Biasuz, Ange Clement, Noura Faraj, Patrick Lemaire, Emmanuel Faure

Abstract read
In one paragraph

Article in eLife, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Benjamin Gallean *Laboratoire d'informatique, de robotique et de microélectronique de Montpellier, LIRMM, Université de Montpellier, CNRS, Montpellier, France.
Tao Laurent *Laboratoire d'informatique, de robotique et de microélectronique de Montpellier, LIRMM, Université de Montpellier, CNRS, Montpellier, France.
Kilian BiasuzCentre de Recherche de Biologie cellulaire de Montpellier, CRBM, Université de Montpellier, CNRS, Montpellier, France.ORCID https://orcid.org/0000-0002-0240-2754
Ange ClementLaboratoire d'informatique, de robotique et de microélectronique de Montpellier, LIRMM, Université de Montpellier, CNRS, Montpellier, France.
Noura FarajLaboratoire d'informatique, de robotique et de microélectronique de Montpellier, LIRMM, Université de Montpellier, CNRS, Montpellier, France.
Patrick LemaireCentre de Recherche de Biologie cellulaire de Montpellier, CRBM, Université de Montpellier, CNRS, Montpellier, France.ORCID https://orcid.org/0000-0003-4925-2009
Emmanuel FaureLaboratoire d'informatique, de robotique et de microélectronique de Montpellier, LIRMM, Université de Montpellier, CNRS, Montpellier, France.ORCID https://orcid.org/0000-0003-2787-0885

Funding

Agence Nationale de la Recherche ANR-10-INBS-04Agence Nationale de la Recherche ANR-19-CE13-0020Agence Nationale de la Recherche ANR-21-CE13-0046EpiGenMed Labex ProjetIA-10-LABX-0012Fondation pour la Recherche Médicale EQU202303016262Occitanie Region ESR-PREMAT-213
6 · The paper itself

Abstract

Thanks to recent promising advances in AI, automated segmentation of imaging datasets has made significant strides. However, the evaluation and curation of 3D and 3D+t datasets remain extremely challenging and highly resource-intensive. We present MorphoNet 2.0, a major conceptual and technical evolution designed to facilitate the segmentation, self-evaluation, and correction of 3D images. The application is accessible to non-programming biologists through user-friendly graphical interfaces and works on all major operating systems. We showcase its power in enhancing segmentation accuracy and boosting interpretability across five previously published segmented datasets. This new approach is crucial for producing ground-truth datasets of discovery-level scientific quality, critical for training and benchmarking advanced AI-driven segmentation tools, as well as for competitive challenges.

Indexed as

Image Processing, Computer-AssistedImaging, Three-DimensionalSoftwareTime-Lapse ImagingHumansascidianA. thalianaCaenorhabditis eleganscomputational biologydevelopmental biologyDrosophila melanogasterPlatynereis dumeriliistarfishsystems biologytribolium castaneum

Identifiers

PMID41329604
PMCPMC12671910

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.