Evidence map›Paper›PMID 41328162›Full record

ArticlePatterns (New York, N.Y.)2025

Pan-microalgal dark proteome mapping via interpretable deep learning and synthetic chimeras.

David R Nelson, Ashish Kumar Jaiswal, Noha Samir Ismail, Alexandra Mystikou, Kourosh Salehi-Ashtiani

Abstract read
In one paragraph

Article in Patterns (New York, N.Y.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

David R NelsonLaboratory of Algal, Artificial Intelligence, Synthetic, and Systems Biology (A2S2 Group), Division of Science and Math, New York University Abu Dhabi (NYUAD), Abu Dhabi, UAE.
Ashish Kumar JaiswalLaboratory of Algal, Artificial Intelligence, Synthetic, and Systems Biology (A2S2 Group), Division of Science and Math, New York University Abu Dhabi (NYUAD), Abu Dhabi, UAE.
Noha Samir IsmailLaboratory of Algal, Artificial Intelligence, Synthetic, and Systems Biology (A2S2 Group), Division of Science and Math, New York University Abu Dhabi (NYUAD), Abu Dhabi, UAE.
Alexandra MystikouLaboratory of Algal, Artificial Intelligence, Synthetic, and Systems Biology (A2S2 Group), Division of Science and Math, New York University Abu Dhabi (NYUAD), Abu Dhabi, UAE.
Kourosh Salehi-AshtianiLaboratory of Algal, Artificial Intelligence, Synthetic, and Systems Biology (A2S2 Group), Division of Science and Math, New York University Abu Dhabi (NYUAD), Abu Dhabi, UAE.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Microalgal genomes contain a vast "dark proteome"-sequences lacking detectable homology that evade conventional classification tools. We developed LA

Indexed as

AIdeep learninggenomicsLLMsmicroalgaeneural networksprotein sequence modelingSSMs

Identifiers

PMID41328162
PMCPMC12664985

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.