Evidence map›Paper›PMID 41328016›Full record

ArticleGut microbes2025

MICOMWeb: a website for microbial community metabolic modeling of the human gut.

Cristóbal Fresno, Juan José Oropeza-Valdez, Perla Itzel Alvarado-Luis, Patricia Peña-González, Armando R Tovar, Nimbe Torres, Christian Diener, Sean Gibbons, Osbaldo Resendis-Antonio

Abstract read
In one paragraph

Article in Gut microbes, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Cristóbal FresnoRed de Apoyo a la Investigación - Coordinación de la Investigación Científica, Universidad Nacional Autónoma de México (UNAM), Ciudad de México, México.ORCID 0000-0003-2039-5188
Juan José Oropeza-ValdezCenter for Complexity Sciences, National Autonomous University of Mexico (UNAM), Ciudad de México, Mexico.ORCID 0000-0003-1093-9970
Perla Itzel Alvarado-LuisHuman Systems Biology Laboratory, National Institute of Genomic Medicine (INMEGEN), Ciudad de México, Mexico.
Patricia Peña-GonzálezCenter for Complexity Sciences, National Autonomous University of Mexico (UNAM), Ciudad de México, Mexico.
Armando R TovarDepartamento de Fisiología de la Nutrición, Instituto Nacional de Ciencias Médicas y Nutrición Salvador Zubirán, Ciudad de México, México.ORCID 0000-0002-1292-1312
Nimbe TorresDepartamento de Fisiología de la Nutrición, Instituto Nacional de Ciencias Médicas y Nutrición Salvador Zubirán, Ciudad de México, México.ORCID 0000-0002-1741-0984
Christian DienerInstitute for Systems Biology, Seattle, WA, USA.ORCID 0000-0002-7476-0868
Sean GibbonsInstitute for Systems Biology, Seattle, WA, USA.ORCID 0000-0002-8724-7916
Osbaldo Resendis-AntonioRed de Apoyo a la Investigación - Coordinación de la Investigación Científica, Universidad Nacional Autónoma de México (UNAM), Ciudad de México, México.ORCID 0000-0001-5220-541X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

MICOMWeb is a user-friendly website for modeling microbial community metabolism in the human gut. This website tackles three constraints when generating

Indexed as

Gastrointestinal MicrobiomeGastrointestinal TractComputational BiologyComputer SimulationHumansInternetModels, BiologicalSoftwarecomputational biologymetabolomicsmicrobiotasoftware computingSystems biology

Identifiers

PMID41328016
PMCPMC12674444

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.