Evidence map›Paper›PMID 41327014›Full record

ArticleBMC genomics2025

Leveraging two novel droplet-based single-cell RNA Sequencing platforms: a comparative study with 10x genomics.

A V Maluchenko, E S Avsievich, Ia S Zvorygina, Z G Antysheva, D O Maksimov, M V Boytsova, D V Tabakov, N A Bodunova, O V Glazova, D I Tychinin and 10 more

Abstract readComparative Study
In one paragraph

Article in BMC genomics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

A V MaluchenkoMoscow Center for Advanced Studies, Kulakova Str. 20, Moscow, 123592, Russia.
E S AvsievichMoscow Center for Advanced Studies, Kulakova Str. 20, Moscow, 123592, Russia.
Ia S ZvoryginaMoscow Center for Advanced Studies, Kulakova Str. 20, Moscow, 123592, Russia.
Z G AntyshevaMoscow Center for Advanced Studies, Kulakova Str. 20, Moscow, 123592, Russia.
D O MaksimovMoscow Center for Advanced Studies, Kulakova Str. 20, Moscow, 123592, Russia.
M V BoytsovaMoscow Center for Advanced Studies, Kulakova Str. 20, Moscow, 123592, Russia.
D V TabakovMoscow Center for Advanced Studies, Kulakova Str. 20, Moscow, 123592, Russia.
N A BodunovaMoscow Clinical Scientific Center N.A. A.S. Loginov, Novogireevskaya Street, 1, 1, Moscow, 111123, Russia.
O V GlazovaMoscow Center for Advanced Studies, Kulakova Str. 20, Moscow, 123592, Russia.
D I TychininFederal State Budgetary Institution «Centre for Strategic Planning and Management of Biomedical Health Risks» of the Federal Medical and Biological Agency (Centre for Strategic Planning, of the Federal Medical and Biological Agency), Pogodinskaya Street, 10, Bld. 1, Moscow, 119121, Russia.
A V BolbatFederal State Budgetary Institution «Centre for Strategic Planning and Management of Biomedical Health Risks» of the Federal Medical and Biological Agency (Centre for Strategic Planning, of the Federal Medical and Biological Agency), Pogodinskaya Street, 10, Bld. 1, Moscow, 119121, Russia.
E S PetriaikinaFederal State Budgetary Institution «Centre for Strategic Planning and Management of Biomedical Health Risks» of the Federal Medical and Biological Agency (Centre for Strategic Planning, of the Federal Medical and Biological Agency), Pogodinskaya Street, 10, Bld. 1, Moscow, 119121, Russia.
D V SvetlichnyyFederal State Budgetary Institution «Centre for Strategic Planning and Management of Biomedical Health Risks» of the Federal Medical and Biological Agency (Centre for Strategic Planning, of the Federal Medical and Biological Agency), Pogodinskaya Street, 10, Bld. 1, Moscow, 119121, Russia.
S M YudinFederal State Budgetary Institution «Centre for Strategic Planning and Management of Biomedical Health Risks» of the Federal Medical and Biological Agency (Centre for Strategic Planning, of the Federal Medical and Biological Agency), Pogodinskaya Street, 10, Bld. 1, Moscow, 119121, Russia.
A A KeskinovFederal State Budgetary Institution «Centre for Strategic Planning and Management of Biomedical Health Risks» of the Federal Medical and Biological Agency (Centre for Strategic Planning, of the Federal Medical and Biological Agency), Pogodinskaya Street, 10, Bld. 1, Moscow, 119121, Russia.
V S YudinFederal State Budgetary Institution «Centre for Strategic Planning and Management of Biomedical Health Risks» of the Federal Medical and Biological Agency (Centre for Strategic Planning, of the Federal Medical and Biological Agency), Pogodinskaya Street, 10, Bld. 1, Moscow, 119121, Russia.
M V WoroncowMoscow Center for Advanced Studies, Kulakova Str. 20, Moscow, 123592, Russia.
V I SkvortsovaThe Federal Medical Biological Agency (FMBA of Russia), Volokolamskoye Shosse, 30, Moscow, 123182, Russia.
J A KrupinovaMoscow Center for Advanced Studies, Kulakova Str. 20, Moscow, 123592, Russia. KrupinovaYA@zdrav.mos.ru.
P Yu VolchkovMoscow Center for Advanced Studies, Kulakova Str. 20, Moscow, 123592, Russia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCurrently, single cell transcriptome profiling technology is gaining popularity, with an increasing number of novel platforms emerging. The development of new technologies is aimed at improving data quality, scale, cost, or labor intensity. Given the rapid evolution of these technologies, a comprehensive and independent comparison of platforms is crucial to identify the most suitable one for studying various biological objects and achieving specific experimental goals.

resultsHere we performed a comparison of two droplet-based high-throughput single-cell platforms, namely, SeekOne and MobiDrop with a widely-used commercial platform from 10× Genomics. The use of different types of samples allowed us to evaluate the performance of the platforms on cell suspensions of varying complexity and quality. 10× showed generally superior performance, although all platforms compared in this study showed acceptable gene yield and allowed identification of all expected cell types. Taking into account the cost and availability of devices and reagents required for each platform and the flexibility in the number of samples loaded onto the chip, SeekOne and MobiDrop might serve as a good alternative.

conclusionsThe results of the current comparison will support the community's efforts to compare different aspects, including sample amount requirements, throughput, cell quality, gene capture efficiency and cell type representativeness.

Indexed as

GenomicsHigh-Throughput Nucleotide SequencingSequence Analysis, RNASingle-Cell AnalysisGene Expression ProfilingHumansBenchmarkDroplet-based platformsMicrofluidicsSingle-cell transcriptomics

Identifiers

PMID41327014
PMCPMC12777333

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.