Evidence map›Paper›PMID 41326407›Full record

ArticleNature communications2025

MYC drives left-handed Z-DNA formation to shape gene expression.

Xinyi Wan, Haonan Fan, Zhuoning Li, Yixuan Du, Yu Liu, Weiwu Zeng, Zhongxing Sun, Juejia Shao, Junqi Jia, Yanjun Zhang and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Xinyi Wan *The Second Affiliated Hospital of Zhejiang University School of Medicine, Life Sciences Institute, Zhejiang University, Hangzhou, China.
Haonan Fan *The Second Affiliated Hospital of Zhejiang University School of Medicine, Life Sciences Institute, Zhejiang University, Hangzhou, China.
Zhuoning Li *The Second Affiliated Hospital of Zhejiang University School of Medicine, Life Sciences Institute, Zhejiang University, Hangzhou, China.
Yixuan Du *The Second Affiliated Hospital of Zhejiang University School of Medicine, Life Sciences Institute, Zhejiang University, Hangzhou, China.
Yu LiuLife Sciences Institute, Zhejiang University, Hangzhou, China.ORCID http://orcid.org/0009-0008-7722-4324
Weiwu ZengLife Sciences Institute, Zhejiang University, Hangzhou, China.
Zhongxing SunLife Sciences Institute, Zhejiang University, Hangzhou, China.
Juejia ShaoLife Sciences Institute, Zhejiang University, Hangzhou, China.
Junqi JiaLife Sciences Institute, Zhejiang University, Hangzhou, China.
Yanjun ZhangLife Sciences Institute, Zhejiang University, Hangzhou, China.ORCID http://orcid.org/0000-0002-5695-6488
Dong FangThe Second Affiliated Hospital of Zhejiang University School of Medicine, Life Sciences Institute, Zhejiang University, Hangzhou, China. dfang@zju.edu.cn.ORCID http://orcid.org/0000-0002-9807-5224

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DNA topology is critical for regulating transcription and maintaining cellular homeostasis. Z-DNA is a left-handed DNA helix in regions with high transcriptional activity. Its physiological function remains poorly understood. Here, we demonstrate that oncoprotein MYC induces the formation of Z-DNA by recruiting the chromatin remodeler FACT, independent of RNA Polymerase II activity. FACT facilitates Z-DNA formation by remodeling H2A/H2B dimers within intact nucleosomes. Additionally, the phosphorylation of FACT regulates its liquid-liquid phase separation, promoting its efficient recruitment to chromatin by MYC. Through a genome-wide analysis and characterization of engineered Z-DNA promoters, we found that Z-DNA directly facilitates the loading of RNA Polymerase II, thereby promoting transcriptional activity. This study elucidates the molecular mechanisms of Z-DNA dynamics and emphasizes its functional importance in transcriptional regulation, providing insights into the role of left-handed DNA structures in chromatin biology and MYC-driven cancer.

Indexed as

DNA, Z-FormGene Expression RegulationProto-Oncogene Proteins c-mycChromatinChromatin Assembly and DisassemblyDNA-Binding ProteinsHistonesHumansNucleosomesPromoter Regions, GeneticRNA Polymerase IITranscription, GeneticChromatinDNA-Binding ProteinsDNA, Z-FormHistonesMYC protein, humanNucleosomesProto-Oncogene Proteins c-mycRNA Polymerase II

Identifiers

PMID41326407
PMCPMC12780141

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.