Evidence map›Paper›PMID 41325550›Full record

ArticleJournal of chemical information and modeling2025

Materials Dual-Source Knowledge Retrieval-Augmented Generation for Local Large Language Models in Photocatalysts.

Wataru Takahara, Yuichi Yamaguchi, Mai Ogano, Fuga Kakami, Yosuke Harashima, Tomoaki Takayama, Shogo Takasuka, Akihiko Kudo, Mikiya Fujii

Abstract read
In one paragraph

Article in Journal of chemical information and modeling, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Sustainable Materials Design With Multi-Modal Artificial Intelligence.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Wataru TakaharaDivision of Materials Science, Nara Institute of Science and Technology, Nara-ken, Ikoma-shi 630-0192, Japan.ORCID 0009-0007-3442-8338
Yuichi YamaguchiDepartment of Applied Chemistry, Faculty of Science, Tokyo University of Science, Shinjuku-ku, Tokyo 162-8601, Japan.ORCID 0000-0003-1897-3487
Mai OganoDepartment of Applied Chemistry, Faculty of Science, Tokyo University of Science, Shinjuku-ku, Tokyo 162-8601, Japan.
Fuga KakamiDepartment of Applied Chemistry, Faculty of Science, Tokyo University of Science, Shinjuku-ku, Tokyo 162-8601, Japan.
Yosuke HarashimaDivision of Materials Science, Nara Institute of Science and Technology, Nara-ken, Ikoma-shi 630-0192, Japan.ORCID 0000-0003-0705-1583
Tomoaki TakayamaDivision of Materials Science, Nara Institute of Science and Technology, Nara-ken, Ikoma-shi 630-0192, Japan.ORCID 0000-0002-4736-7454
Shogo TakasukaDivision of Materials Science, Nara Institute of Science and Technology, Nara-ken, Ikoma-shi 630-0192, Japan.
Akihiko KudoDepartment of Applied Chemistry, Faculty of Science, Tokyo University of Science, Shinjuku-ku, Tokyo 162-8601, Japan.ORCID 0000-0002-5665-5482
Mikiya FujiiDivision of Materials Science, Nara Institute of Science and Technology, Nara-ken, Ikoma-shi 630-0192, Japan.ORCID 0000-0002-3728-3097

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Large language models (LLMs) have the potential to serve as collaborative assistants in scientific research. However, adapting them to specialized domains is difficult because it requires the integration of domain-specific knowledge. We propose Materials Dual-Source Knowledge Retrieval-Augmented Generation (MDSK-RAG), a retrieval-augmented generation (RAG) framework that enables domain specialization of LLMs for materials development under fully offline (no-Internet) operation to ensure data confidentiality. The framework unifies two complementary knowledge sources, experimental CSV data (practical knowledge) and scientific PDF literature (theoretical insights), by converting tabular records into template-based text, retrieving relevant passages from each source, summarizing them with a local LLM, and merging the summaries with the user query prior to generation. As a case study, we applied the framework to metal-sulfide photocatalysts using 740 in-house experimental records and 20 scientific PDFs. We evaluated the framework on a benchmark consisting of 14 expert-defined questions and used two-sided Wilcoxon signed-rank tests for paired comparisons. Models with fewer than 10 billion parameters were executed on a laptop, whereas larger models were run on a dedicated local server; the cloud-based LLM (GPT-4o) was evaluated via the cloud service. For practical deployment, gemma-2-9b-it (<10 billion parameters) was chosen as the primary local model; we additionally tested Qwen2.5-7B-Instruct and a larger gemma-2-27b-it to assess model choice and scalability. For gemma-2-9b-it, the framework increased the median cosine similarity to expert reference answers from 0.63 to 0.71, an absolute increase of 0.08 (corresponding to a relative percentage gain of 12.70%; Wilcoxon signed-rank test statistic:

Indexed as

Information Storage and RetrievalCatalysisKnowledge BasesLarge Language Models

Identifiers

PMID41325550
PMCPMC12728951

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.