Evidence map›Paper›PMID 41324443›Full record

ArticleThe ISME journal2025

Regulation of plant Ni uptake by soil-borne microorganisms occurs independently of their Ni-solubilizing capabilities.

Agnieszka Domka, Maciej Gustab, Roman J Jędrzejczyk, Rafał Ważny, Alice Tognacchini, Markus Puschenreiter, Paweł Łabaj, Agata Muszyńska, Weronika Kosowicz, Kinga Jarosz and 1 more

Abstract read
In one paragraph

Article in The ISME journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Physiological Adaptation Strategy of the Pseudo-MetallophyteAntioxidants (Basel, Switzerland) · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Agnieszka DomkaPolish Academy of Sciences, W. Szafer Institute of Botany, Lubicz 46, Kraków 31-512, Poland.ORCID 0000-0002-7035-5339
Maciej GustabMalopolska Centre of Biotechnology, Jagiellonian University in Kraków, Gronostajowa 7a, Kraków 30-387, Poland.
Roman J JędrzejczykMalopolska Centre of Biotechnology, Jagiellonian University in Kraków, Gronostajowa 7a, Kraków 30-387, Poland.
Rafał WażnyMalopolska Centre of Biotechnology, Jagiellonian University in Kraków, Gronostajowa 7a, Kraków 30-387, Poland.
Alice TognacchiniVienna, Department of Forest and Soil Sciences, Institute of Soil Research, University of Natural Resources and Life Sciences, Konrad-Lorenz Straße 24, Tulln 3430, Austria.
Markus PuschenreiterVienna, Department of Forest and Soil Sciences, Institute of Soil Research, University of Natural Resources and Life Sciences, Konrad-Lorenz Straße 24, Tulln 3430, Austria.
Paweł ŁabajMalopolska Centre of Biotechnology, Jagiellonian University in Kraków, Gronostajowa 7a, Kraków 30-387, Poland.
Agata MuszyńskaMalopolska Centre of Biotechnology, Jagiellonian University in Kraków, Gronostajowa 7a, Kraków 30-387, Poland.
Weronika KosowiczMalopolska Centre of Biotechnology, Jagiellonian University in Kraków, Gronostajowa 7a, Kraków 30-387, Poland.
Kinga JaroszFaculty of Geography and Geology, Institute of Geological Sciences, Jagiellonian University, Gronostajowa 3a, Kraków 30-387, Poland.
Piotr RozpądekMalopolska Centre of Biotechnology, Jagiellonian University in Kraków, Gronostajowa 7a, Kraków 30-387, Poland.

Funding

Austrian Science Fund FWF 2021/43/B/NZ9/03034
6 · The paper itself

Abstract

Plant-associated microbial communities play a vital role in host adaptation to environmental stress, yet their contributions to plant nickel (Ni) tolerance strategies remain unclear. It is not understood whether the same microbial community elicits similar responses across different plant species or regulates stress adaptation in a host-specific manner. Although microorganisms influence plant responses to metal toxicity by altering metal bioavailability in the rhizosphere, their potential to optimize plant metal uptake is less explored. In this study, we evaluated whether synthetic microbial communities enhance Ni uptake in two species with contrasting metal strategies: the hyperaccumulator Odontarrhena chalcidica and the Ni-excluding Arabidopsis arenosa. We hypothesized that soil microorganisms support plant metal adaptation by improving physiological function rather than altering soil metal availability. Our results show that O. chalcidica reached its full hyperaccumulating potential only when co-cultivated with a soil-derived microbial community, regardless of the microorganisms' ability to mobilize Ni or promote plant growth. Microorganisms that enhanced Ni uptake had no effect on soil Ni availability. Microbial community analysis revealed species-specific microbiota assembly, with O. chalcidica being more responsive yet more selective. Serpentine-soil microbiota enhanced Ni uptake in O. chalcidica by upregulating iron-transporter genes, confirming reliance on Fe-transport pathways for Ni acquisition. In contrast, the same inoculum induced Zn-transporters and NRT2.1/NRT2.2 in A. arenosa, reflecting strategy of cation partitioning and nutrient-transport fine-tuning under Ni stress. These findings refine criteria for selecting microorganisms in phytoremediation and highlight that the functional impact of plant-associated microorganisms on metal handling outweigh their effects on metal solubility in soil.

Indexed as

ArabidopsisAsteraceaeBacteriaNickelSoil MicrobiologyMicrobiotaRhizosphereSoilNickelSoilabiotic stress adaptationmetal hyperaccumulationmicrobiota

Identifiers

PMID41324443
PMCPMC12746290

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.