Evidence map›Paper›PMID 41321035›Full record

ArticleThe New phytologist2026

Floral stage optimization and immune evasion enhance Agrobacterium-mediated genome editing in Arabidopsis.

Mao-Sen Liu, Teng-Kuei Huang, Yi-Chieh Wang, Si-Chong Wang, Chih-Hang Wu, Chih-Horng Kuo, Erh-Min Lai

Abstract read
In one paragraph

Article in The New phytologist, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Mao-Sen Liu *Institute of Plant and Microbial Biology, Academia Sinica, Taipei, 115201, Taiwan.ORCID https://orcid.org/0000-0003-0324-5866
Teng-Kuei Huang *Institute of Plant and Microbial Biology, Academia Sinica, Taipei, 115201, Taiwan.ORCID https://orcid.org/0000-0001-7369-3678
Yi-Chieh WangInstitute of Plant and Microbial Biology, Academia Sinica, Taipei, 115201, Taiwan.
Si-Chong WangInstitute of Plant and Microbial Biology, Academia Sinica, Taipei, 115201, Taiwan.ORCID https://orcid.org/0000-0002-6192-8844
Chih-Hang WuInstitute of Plant and Microbial Biology, Academia Sinica, Taipei, 115201, Taiwan.ORCID https://orcid.org/0000-0003-1616-1872
Chih-Horng KuoInstitute of Plant and Microbial Biology, Academia Sinica, Taipei, 115201, Taiwan.ORCID https://orcid.org/0000-0002-2857-0529
Erh-Min LaiInstitute of Plant and Microbial Biology, Academia Sinica, Taipei, 115201, Taiwan.ORCID https://orcid.org/0000-0003-3630-8683

Funding

Academia Sinica, Taiwan Academia Sinica GCP AS-GC-111-L02
6 · The paper itself

Abstract

Agrobacterium-mediated transformation by floral inoculation (AMT-FI) enables genetic engineering without tissue culture. It is widely used in the model plant Arabidopsis thaliana, yet its efficiency and broader applicability remain limited. Here, we used a dual-reporter system (RUBY and hygromycin resistance) to identify key floral stages and engineered Agrobacterium strains to evade plant immunity, leading to enhanced transient expression and genome editing (GE). We determined that flowers opened at 6 d post inoculation (DPI) are optimal for high transformation efficiency, with nearly 100% of siliques harboring transformants. However, Agrobacterium infection induced ovule abortion, particularly in wild-type (Col-0) plants, whereas efr mutants lacking the EF-Tu receptor (EFR)-mediated pattern-triggered immunity showed reduced ovule abortion. Notably, efr mutants exhibited more RUBY-positive ovules and significantly enhanced GE efficiency. Two engineered stealth Agrobacterium strains (AS201 and AS202) expressing a chimeric EF-Tu for evading recognition by EFR enhanced both transient transformation and GE efficiency. Remarkably, genome-edited T1 plants could be recovered based on phenotype or direct sequencing without the need for antibiotic selection when targeting flowers opened at 6 DPI. By integrating floral stage selection, immune evasion, and Agrobacterium engineering, this study provides a practical and versatile platform to advance plant genome engineering.

Indexed as

AgrobacteriumArabidopsisFlowersGene EditingImmune EvasionArabidopsis ProteinsMutationOvulePlant ImmunityPlants, Genetically ModifiedTransformation, GeneticArabidopsis ProteinsAgrobacteriumAgrobacterium‐mediated transformationArabidopsisEFREF‐Tufloral dipgenome editingplant immunity

Identifiers

PMID41321035
PMCPMC12825397

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.