Evidence map›Paper›PMID 41318824›Full record

ArticleCommunications biology2025

Light-harvesting by antenna-containing xanthorhodopsin from an Antarctic Pseudanabaenaceae cyanobacterium.

María Del Carmen Marín, Shunya Murakoshi, Andrey Rozenberg, Tatsuki Tanaka, Masae Konno, Wataru Shihoya, Osamu Nureki, Oded Béjà, Keiichi Inoue

Abstract read
In one paragraph

Article in Communications biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

María Del Carmen Marín *Faculty of Biology, Technion⎯Israel Institute of Technology, Haifa, Israel. mpmarin@ujaen.es.ORCID http://orcid.org/0000-0001-6603-1692
Shunya Murakoshi *Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.
Andrey RozenbergFaculty of Biology, Technion⎯Israel Institute of Technology, Haifa, Israel.ORCID http://orcid.org/0000-0001-9534-2297
Tatsuki TanakaDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.
Masae KonnoThe Institute for Solid State Physics, The University of Tokyo, Kashiwa, Chiba, Japan.ORCID http://orcid.org/0000-0002-0605-1816
Wataru ShihoyaDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan. wtrshh9@keio.jp.
Osamu NurekiDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan. nureki@bs.s.u-tokyo.ac.jp.ORCID http://orcid.org/0000-0003-1813-7008
Oded BéjàFaculty of Biology, Technion⎯Israel Institute of Technology, Haifa, Israel. beja@technion.ac.il.ORCID http://orcid.org/0000-0001-6629-0192
Keiichi InoueThe Institute for Solid State Physics, The University of Tokyo, Kashiwa, Chiba, Japan. inoue@issp.u-tokyo.ac.jp.ORCID http://orcid.org/0000-0002-6898-4347

Funding

Azrieli Foundation Azrieli Postdoctoral Fellowship (cohort 2022-2023)
6 · The paper itself

Abstract

Microbial rhodopsins are light-sensitive proteins vital to various phototrophic and sensory processes in microorganisms. Xanthorhodopsins, with their dual chromophore system involving retinal and carotenoids, have been predominantly studied in the extreme halophilic bacterium Salinibacter ruber and in the early-branching thylakoid-less cyanobacterium Gloeobacter violaceus, where they facilitate light-driven outward proton pumping. However, their distribution, binding specificity, and ecological significance in cyanobacteria remain poorly understood. Here we report the incidence of xanthorhodopsin genes in cyanobacterial genomes and characterize psXR, a xanthorhodopsin from an uncultured Antarctic cyanobacterium from the filamentous family of Pseudanabaenaceae that binds a hydroxylated carotenoid antenna. Through bioinformatic, spectroscopic, functional and structural analyses, we determine the properties of psXR and potential physiological roles of cyanobacterial xanthorhodopsins. Our findings suggest xanthorhodopsins' role in modulating light-harvesting efficiency in cyanobacteria, particularly in extreme environments. The antenna binding and associated structural changes likely provide selective advantages for adapting to polar light conditions such as prolonged low light intensities and spectral shifts, contributing to cyanobacterial survival in harsh habitats.

Indexed as

Bacterial ProteinsCyanobacteriaRhodopsins, MicrobialAntarctic RegionsCarotenoidsLightBacterial ProteinsCarotenoidsRhodopsins, Microbial

Identifiers

PMID41318824
PMCPMC12779958

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.