Evidence map›Paper›PMID 41315870›Full record

ArticleNature communications2025

Argonaute-HNH filaments triggered by invader DNA confer bacterial immunity.

Anna Kanevskaya, Manju Narwal, Lidiya Lisitskaya, Andrey V Moiseenko, Olga S Sokolova, Nikolai N Sluchanko, Katsuhiko S Murakami, Andrey Kulbachinskiy

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. A methylome-derived mbioRxiv : the preprint server for biology · 2026
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Anna KanevskayaInstitute of Gene Biology, Russian Academy of Sciences, Moscow, Russia. annakanevskaya5@gmail.com.ORCID http://orcid.org/0009-0005-4485-0589
Manju Narwal *Department of Biochemistry and Molecular Biology, Huck Institutes of the Life Sciences, the Center for Structural Biology and the Center for RNA biology, Pennsylvania State University, University Park, PA, USA.ORCID http://orcid.org/0000-0002-9718-5827
Lidiya Lisitskaya *Institute of Gene Biology, Russian Academy of Sciences, Moscow, Russia.ORCID http://orcid.org/0000-0002-5283-7983
Andrey V Moiseenko *Faculty of Biology, Lomonosov Moscow State University, Moscow, Russia.ORCID http://orcid.org/0000-0003-1112-2356
Olga S SokolovaFaculty of Biology, Lomonosov Moscow State University, Moscow, Russia.
Nikolai N SluchankoA.N. Bach Institute of Biochemistry, Federal Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, Russia.ORCID http://orcid.org/0000-0002-8608-1416
Katsuhiko S MurakamiDepartment of Biochemistry and Molecular Biology, Huck Institutes of the Life Sciences, the Center for Structural Biology and the Center for RNA biology, Pennsylvania State University, University Park, PA, USA.ORCID http://orcid.org/0000-0003-2244-0501
Andrey KulbachinskiyInstitute of Gene Biology, Russian Academy of Sciences, Moscow, Russia. avkulb@yandex.ru.ORCID http://orcid.org/0000-0002-2292-6424

Funding

HEI: Acquisition of a Talos Arctica G2S10OD026822 · OD · PENNSYLVANIA STATE UNIVERSITY, THE · PI HAFENSTEIN, SUSAN · 2019 to 2019
$2.0M
Structural study of direct associations between cellular RNA polymerase and regulatory factors during the transcription cycleR35GM156623 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI Katsuhiko Murakami · 2025 to 2026
$903k
NIGMS NIH HHS R35 GM156623NIH HHS S10 OD026822Russian Science Foundation (RSF) 22-14-00182-P
6 · The paper itself

Abstract

Argonaute proteins provide innate immunity in all domains of life through guide-dependent recognition and cleavage of invader nucleic acids. Many short prokaryotic Argonautes (pAgos) lack nuclease activity and are instead co-encoded with tentative nuclease effectors, but their activation mechanisms remain unknown. Here, we characterize SPARHA systems (short prokaryotic argonautes, HNH-associated), containing HNH nuclease effectors. RNA-guided target DNA recognition by pAgo induces formation of SPARHA filaments with a chain of double nuclease sites formed by HNH tetramers, leading to indiscriminate collateral degradation of DNA and protecting bacterial population from invaders. We show that the assembly of filaments proceeds via a universal activation pathway involving a cascade of target-induced conformational changes in SPARHA, conserved in other short pAgo systems containing various types of effectors. pAgos and associated effectors act as modular defense systems that translate recognition of specific DNA into immune response through assembly of supramolecular complexes, deleterious for invaders and potentially useful for biotechnology.

Indexed as

Argonaute ProteinsBacteriaBacterial ProteinsDNA, BacterialImmunity, InnateArgonaute ProteinsBacterial ProteinsDNA, Bacterial

Identifiers

PMID41315870
PMCPMC12738770

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.