Evidence map›Paper›PMID 41315592›Full record

ArticleCommunications biology2025

A proximity map of RAB GTPases delineates roles for RAB14 in EARP complex and UHRF1BP1 endosomal recruitments.

Véronique Gaudreault, Benoit Marchand, Raphaëlle Larcher, Sonya Nassari, Francis Bourassa, Mathilde Moreau, Dominique Jean, François-Michel Boisvert, Marie A Brunet, Steve Jean

Abstract read
In one paragraph

Article in Communications biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Véronique Gaudreault *Faculté de Médecine et des Sciences de la Santé, Université de Sherbrooke, Sherbrooke, QC, Canada.ORCID http://orcid.org/0009-0008-4798-4541
Benoit Marchand *Faculté de Médecine et des Sciences de la Santé, Université de Sherbrooke, Sherbrooke, QC, Canada.ORCID http://orcid.org/0000-0001-9302-6688
Raphaëlle Larcher *Faculté de Médecine et des Sciences de la Santé, Université de Sherbrooke, Sherbrooke, QC, Canada.
Sonya NassariFaculté de Médecine et des Sciences de la Santé, Université de Sherbrooke, Sherbrooke, QC, Canada.
Francis BourassaFaculté de Médecine et des Sciences de la Santé, Université de Sherbrooke, Sherbrooke, QC, Canada.ORCID http://orcid.org/0009-0001-9012-7245
Mathilde MoreauFaculté de Médecine et des Sciences de la Santé, Université de Sherbrooke, Sherbrooke, QC, Canada.
Dominique JeanFaculté de Médecine et des Sciences de la Santé, Université de Sherbrooke, Sherbrooke, QC, Canada.
François-Michel BoisvertFaculté de Médecine et des Sciences de la Santé, Université de Sherbrooke, Sherbrooke, QC, Canada.ORCID http://orcid.org/0000-0001-8882-8619
Marie A BrunetFaculté de Médecine et des Sciences de la Santé, Université de Sherbrooke, Sherbrooke, QC, Canada.ORCID http://orcid.org/0000-0001-5973-3522
Steve JeanFaculté de Médecine et des Sciences de la Santé, Université de Sherbrooke, Sherbrooke, QC, Canada. steve.jean@usherbrooke.ca.ORCID http://orcid.org/0000-0001-6881-5781

Funding

Gouvernement du Canada | Natural Sciences and Engineering Research Council of Canada (Conseil de Recherches en Sciences Naturelles et en Génie du Canada) 03730
6 · The paper itself

Abstract

RAB GTPases, the most abundant small GTPase family, regulate membrane trafficking, including cargo sorting, vesicle budding, transport, docking, and fusion. Guanine exchange factors and GTPase-activating proteins control their activity. Activated RABs recruit effectors to mediate trafficking, but identifying RAB-associated proteins is challenging due to the transient nature of their interactions. Recent proximity labeling techniques enable covalent tagging of nearby proteins, allowing for comprehensive mapping of RAB GTPases neighboring proteins. Here we report APEX2 proximity labeling of 23 human RABs and their neighboring proteomes. Bioinformatic analyses revealed proximal proteins for a broad range of RABs. Notably, we identified a novel interaction between RAB25 and DENND6A, with RAB25 overexpression promoting DENND6A recruitment to recycling endosomes. We also uncovered functional links between RAB14 and the EARP complex, as well as SHIP164 and its ortholog UHRF1BP1. Our dataset offers a valuable resource for exploring new functional connections between RAB GTPases and their associated proteins.

Indexed as

Endosomesrab GTP-Binding ProteinsUbiquitin-Protein LigasesHEK293 CellsHeLa CellsHumansI-kappa B KinaseProtein TransportI-kappa B KinaseIKBKG protein, humanRab14 protein, humanrab GTP-Binding ProteinsUbiquitin-Protein Ligases

Identifiers

PMID41315592
PMCPMC12663406

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.