Evidence map›Paper›PMID 41315514›Full record

ArticleScientific reports2025

Stability analysis of reference genes in Maconellicoccus hirsutus across various conditions including dsRNA treatment.

Nikita Negi, Gandhi Gracy Ramasamy, Selva Babu Selvamani, K V Nagarjuna Reddy, T C Suman, Airneni Sunny Rao, Venkatesan Thiruvengadam, Muthugounder Mohan, Vinod Kumar Dubey, Satya N Sushil

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Nikita NegiDivision of Genomic Resources, ICAR-National Bureau of Agricultural Insect Resource, Bengaluru, 560024, India.
Gandhi Gracy RamasamyDivision of Genomic Resources, ICAR-National Bureau of Agricultural Insect Resource, Bengaluru, 560024, India. gandhi_gracy@yahoo.co.in.
Selva Babu SelvamaniDivision of Genomic Resources, ICAR-National Bureau of Agricultural Insect Resource, Bengaluru, 560024, India.
K V Nagarjuna ReddyDivision of Genomic Resources, ICAR-National Bureau of Agricultural Insect Resource, Bengaluru, 560024, India.
T C SumanDivision of Genomic Resources, ICAR-National Bureau of Agricultural Insect Resource, Bengaluru, 560024, India.
Airneni Sunny RaoDivision of Genomic Resources, ICAR-National Bureau of Agricultural Insect Resource, Bengaluru, 560024, India.
Venkatesan ThiruvengadamDivision of Genomic Resources, ICAR-National Bureau of Agricultural Insect Resource, Bengaluru, 560024, India.
Muthugounder MohanDivision of Genomic Resources, ICAR-National Bureau of Agricultural Insect Resource, Bengaluru, 560024, India.
Vinod Kumar DubeyDepartment of Agricultural Entomology, College of Agriculture, IGKV, Raipur, 492021, India.
Satya N SushilICAR-National Bureau of Agricultural Insect Resources, Bengaluru, 560024, India.

Funding

ICAR- National Bureau of Agricultural Insect Resources, Bengaluru CRSCNBAIRSIL202200100211
6 · The paper itself

Abstract

Maconellicoccus hirsutus is a polyphagous pest globally distributed in tropical and subtropical regions. In India, it is reported to adversely affect commercially significant crops, including grapes, guava, custard apple, and mulberry. Gene expression studies have become crucial for comprehending gene function and understanding molecular pathways, which are essential for developing effective pest management strategies. The RT-qPCR is a highly sensitive technique used to study the expression patterns of target genes. However, it's crucial to use a suitable internal reference gene, which is often overlooked before delving into the analysis of gene expression via RT-qPCR. The present study evaluates the expression stability of six candidate reference genes (28S, ATP51a, β-tubulin, GAPDH, α-tubulin, and Actin) under different experimental conditions (dsRNA-treated condition, starved conditions, different food sources: pumpkin, hibiscus, and sucrose; and sex-specific) using four statistical algorithms like geNorm, NormFinder, BestKeeper, and RefFinder. The results showed that GAPDH and β-tubulin expression were stable in dsRNA treatment. Reference genes GAPDH and ATP51a exhibited stability in both sex-specific and starvation conditions, while GAPDH and α-tubulin exhibited stability in different food sources. Our findings will aid in enhancing the precision of RT-qPCR analysis for future functional studies of the target gene in M. hirsutus.

Indexed as

RNA, Double-StrandedAnimalsGene Expression ProfilingReal-Time Polymerase Chain ReactionReference StandardsTubulinRNA, Double-StrandedTubulindsRNAGAPDHM. hirsutusNormalizationReference genesRT-qPCR

Identifiers

PMID41315514
PMCPMC12663401

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.