Evidence map›Paper›PMID 41315456›Full record

ArticleScientific data2025

Making genomic data FAIR through effective Data Portals.

Matthew L Speir, Wei Kheng Teh, Marc D Perry, Rachel Schwartz, Parisa Nejad, Tim Harris, Clay Fischer, Mark Diekhans, Brian T Lee, Benedict Paten and 2 more

Abstract read
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Matthew L SpeirGenomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA.
Wei Kheng TehEMBL-EBI European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Marc D PerryGenomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA.
Rachel SchwartzGenomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA.ORCID http://orcid.org/0000-0002-7431-4139
Parisa NejadGenomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA.
Tim HarrisGenomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA.
Clay FischerGenomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA.
Mark DiekhansGenomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA.
Brian T LeeGenomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA.
Benedict PatenGenomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA.ORCID http://orcid.org/0000-0001-8863-3539
W James KentGenomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA.
Maximilian HaeusslerGenomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA. mhaeussl@ucsc.edu.

Funding

The AnVIL Data Ecosystem DACReS SupplementU24HG010262 · NHGRI · BROAD INSTITUTE, INC. · PI Robert J Carroll, Jonathan Lawson · 2018 to 2026
$40.5M
The UCSC Genome BrowserU41HG002371 · NHGRI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI KENT, WILLIAM JAMES · 2012 to 2021
$36.6M
The WashU-UCSC-EBI Human Genome Reference Center."U41HG010972 · NHGRI · WASHINGTON UNIVERSITY · PI Ira M Hall, Heng Li · 2019 to 2026
$24.9M
The Integration of Trans-omics for Precision Medicine (TOPMED) and Other Heart, Lung, Blood and Sleep (HLBS) Data Sets with the Data CommonsOT3HL142481 · NHLBI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI GROSSMAN, ROBERT L., PATEN, BENEDICT · 2017 to 2020
$24.9M
ELSI Administrative Supplement - Center for Human Reference Genome DiversityU01HG010971 · NHGRI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI EICHLER, EVAN, JARVIS, ERICH D · 2019 to 2023
$18.4M
The UCSC Genome BrowserU24HG002371 · NHGRI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI Maximilian Haeussler · 2022 to 2026
$17.6M
GENCODE: comprehensive reference genome annotation for human and mouseU24HG007234 · NHGRI · EUROPEAN MOLECULAR BIOLOGY LABORATORY · PI Fergal James Martin · 2021 to 2026
$16.1M
Evolution of new regulatory networks via genetic arms races between KRAB zinc finger proteins and retrotransposonsR01HG010329 · NHGRI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI SALAMA, SOFIE REDA · 2019 to 2022
$2.7M
Enabling Comparative PangenomicsR01HG010485 · NHGRI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI HAUSSLER, DAVID H, MARTIN, FERGAL JAMES · 2020 to 2023
$2.6M
California Department of Public Health (CDPH) 20-11088NHGRI NIH HHS R01 HG010329NHGRI NIH HHS R01 HG010485NHGRI NIH HHS U01 HG010971NHGRI NIH HHS U24 HG002371NHGRI NIH HHS U24 HG007234NHGRI NIH HHS U24 HG010262NHGRI NIH HHS U41 HG002371NHGRI NIH HHS U41 HG010972NHLBI NIH HHS OT3 HL142481Silicon Valley Community Foundation (SVCF) 2017-171531(5022)Silicon Valley Community Foundation (SVCF) CZIF2022-007487U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) 3OT3HL142481U.S. Department of Health & Human Services | NIH | National Human Genome Research Institute (NHGRI) 2U24HG002371U.S. Department of Health & Human Services | NIH | National Human Genome Research Institute (NHGRI) 2U24HG007234U.S. Department of Health & Human Services | NIH | National Human Genome Research Institute (NHGRI) 5R01HG010329U.S. Department of Health & Human Services | NIH | National Human Genome Research Institute (NHGRI) 5R01HG010485U.S. Department of Health & Human Services | NIH | National Human Genome Research Institute (NHGRI) 5U01HG010971U.S. Department of Health & Human Services | NIH | National Human Genome Research Institute (NHGRI) 5U24HG010262U.S. Department of Health & Human Services | NIH | National Human Genome Research Institute (NHGRI) 5U41HG002371
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Identifiers

PMID41315456
PMCPMC12663326

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.