Evidence map›Paper›PMID 41315362›Full record

ArticleNature communications2025

Structural organization of p62 filaments and the cellular ultrastructure of calcium-rich p62-enwrapped lipid droplet cargo.

Sabrina Berkamp, Lisa Jungbluth, Alexandros Katranidis, Siavash Mostafavi, Olivera Korculanin, Peng-Han Lu, Lotte Ickert, Maya M Dierig, Lokesh Sharma, Lipi Thukral and 5 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Sabrina Berkamp *Ernst-Ruska Centre for Microscopy and Spectroscopy with Electrons, ER-C-3/Structural Biology, Forschungszentrum Jülich, Jülich, Germany. s.berkamp@fz-juelich.de.ORCID http://orcid.org/0000-0002-9639-9698
Lisa Jungbluth *Ernst-Ruska Centre for Microscopy and Spectroscopy with Electrons, ER-C-3/Structural Biology, Forschungszentrum Jülich, Jülich, Germany.ORCID http://orcid.org/0000-0002-5295-0521
Alexandros Katranidis *Ernst-Ruska Centre for Microscopy and Spectroscopy with Electrons, ER-C-3/Structural Biology, Forschungszentrum Jülich, Jülich, Germany.ORCID http://orcid.org/0000-0002-1785-1659
Siavash MostafaviErnst-Ruska Centre for Microscopy and Spectroscopy with Electrons, ER-C-3/Structural Biology, Forschungszentrum Jülich, Jülich, Germany.ORCID http://orcid.org/0000-0002-4330-3285
Olivera KorculaninErnst-Ruska Centre for Microscopy and Spectroscopy with Electrons, ER-C-3/Structural Biology, Forschungszentrum Jülich, Jülich, Germany.
Peng-Han LuErnst-Ruska Centre for Microscopy and Spectroscopy with Electrons, ER-C-1/Physics of Nanoscale Systems, Forschungszentrum Jülich, Jülich, Germany.
Lotte IckertCECAD Excellence Center & Center for Physiology and Pathophysiology, Faculty of Medicine and University Hospital Cologne, Cologne, Germany.
Maya M DierigInstitute of Biology II, University of Freiburg, Schänzlestraße 1, Freiburg, Germany.ORCID http://orcid.org/0009-0003-3163-8242
Lokesh SharmaComputational Structural Biology Lab, CSIR-Institute of Genomics and Integrative Biology, Mathura Road, New Delhi, India.ORCID http://orcid.org/0009-0005-5453-7414
Lipi ThukralComputational Structural Biology Lab, CSIR-Institute of Genomics and Integrative Biology, Mathura Road, New Delhi, India.ORCID http://orcid.org/0000-0002-1961-039X
Pitter F HuesgenInstitute of Biology II, University of Freiburg, Schänzlestraße 1, Freiburg, Germany.ORCID http://orcid.org/0000-0002-0335-2242
Natalia L KononenkoCECAD Excellence Center & Center for Physiology and Pathophysiology, Faculty of Medicine and University Hospital Cologne, Cologne, Germany.ORCID http://orcid.org/0000-0002-3425-6659
Jörg FitterErnst-Ruska Centre for Microscopy and Spectroscopy with Electrons, ER-C-3/Structural Biology, Forschungszentrum Jülich, Jülich, Germany.
Rafal E Dunin-BorkowskiErnst-Ruska Centre for Microscopy and Spectroscopy with Electrons, ER-C-1/Physics of Nanoscale Systems, Forschungszentrum Jülich, Jülich, Germany.ORCID http://orcid.org/0000-0001-8082-0647
Carsten SachseErnst-Ruska Centre for Microscopy and Spectroscopy with Electrons, ER-C-3/Structural Biology, Forschungszentrum Jülich, Jülich, Germany. c.sachse@fz-juelich.de.ORCID http://orcid.org/0000-0002-1168-5143

Funding

Boehringer Ingelheim Fonds (Stiftung für medizinische Grundlagenforschung) Exploration grantEC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) 101118656Wellcome Trust
6 · The paper itself

Abstract

The selective autophagy receptor p62/SQSTM1 is known to form higher-order filaments in vitro and to undergo liquid-liquid phase separation when mixed with poly-ubiquitin. Here, we determine the full-length cryo-EM structure of p62 and elucidate a structured double helical filament scaffold composed of the PB1-domain associated with the flexible C-terminal part and the solvent-accessible major groove. At different pH values and upon binding to soluble LC3, LC3-conjugated membranes and poly-ubiquitin, we observe p62 filament re-arrangements in the form of structural unwinding, disassembly, lateral association and bundling, respectively. In the cellular environment, under conditions of ATG5 knockdown leading to stalled autophagy, we imaged high-contrast layers consisting of p62 oligomers enwrapping lipid droplets by cryogenic electron tomography in situ, which we identified as calcium as well as phosphorus by compositional spectroscopy analysis. Together, we visualize the cellular ultrastructure of p62 oligomers with high calcium content as a potential early stage of autophagy.

Indexed as

CalciumLipid DropletsSequestosome-1 ProteinAutophagyCryoelectron MicroscopyHeLa CellsHumansMicrotubule-Associated ProteinsCalciumMAP1LC3A protein, humanMicrotubule-Associated ProteinsSequestosome-1 ProteinSQSTM1 protein, human

Identifiers

PMID41315362
PMCPMC12669770

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.