Evidence map›Paper›PMID 41315240›Full record

ArticleNature communications2025

Discovery of a bifunctional PKMYT1-targeting PROTAC empowered by AI-generation.

Yazhou Wang, Xiaomin Wang, Tingting Liu, Chao Wang, Qingshuo Meng, Fanye Meng, Jiaojiao Yu, Jinxin Liu, Yaya Fan, David Gennert and 7 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Review
  6. Review
  7. Review
  8. Article
  9. Review
  10. Article
  11. Review
  12. Target discovery and drug design in the era of artificial intelligence.Medicinal chemistry research : an international journal for rapid communications on design and mechanisms of action of biologically active agents · 2026
    Review
  13. Article
  14. Review
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Yazhou Wang *Insilico Medicine Shanghai Ltd., Shanghai, China.
Xiaomin Wang *Insilico Medicine Shanghai Ltd., Shanghai, China.
Tingting Liu *Insilico Medicine Shanghai Ltd., Shanghai, China.
Chao WangInsilico Medicine Shanghai Ltd., Shanghai, China.
Qingshuo MengInsilico Medicine Shanghai Ltd., Shanghai, China.
Fanye MengInsilico Medicine Shanghai Ltd., Shanghai, China.
Jiaojiao YuInsilico Medicine Shanghai Ltd., Shanghai, China.
Jinxin LiuInsilico Medicine Shanghai Ltd., Shanghai, China.
Yaya FanInsilico Medicine Shanghai Ltd., Shanghai, China.
David GennertInsilico Medicine US Inc., Cambridge, MA, USA.ORCID http://orcid.org/0000-0002-8668-3601
Frank W PunInsilico Medicine Hong Kong Ltd., Hong Kong SAR, China.ORCID http://orcid.org/0000-0001-8801-6645
Alex AliperInsilico Medicine AI Ltd., Masdar City, Abu Dhabi, UAE.
Feng RenInsilico Medicine Shanghai Ltd., Shanghai, China.ORCID http://orcid.org/0000-0001-9157-9182
Man ZhangInsilico Medicine Shanghai Ltd., Shanghai, China.
Xin CaiInsilico Medicine Shanghai Ltd., Shanghai, China. xin.cai@insilico.ai.ORCID http://orcid.org/0009-0008-5044-6568
Xiao DingInsilico Medicine Shanghai Ltd., Shanghai, China. xiao.ding@insilico.ai.ORCID http://orcid.org/0000-0003-3482-1870
Alex ZhavoronkovInsilico Medicine Shanghai Ltd., Shanghai, China. alex@insilico.com.ORCID http://orcid.org/0000-0001-7067-8966

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PKMYT1 has recently emerged as a compelling therapeutic target for precision cancer therapy due to its synthetic lethality with oncogenic alterations such as CCNE1 amplification and mutations in FBXW7 and PPP2R1A. Current small molecule PKMYT1 inhibitors face limitations, such as insufficient molecular diversity and poor selectivity. We herein use our generative AI platform to develop a bifunctional PKMYT1 degrader by linking an entirely novel PKMYT1 inhibitor to an optimized cereblon (CRBN) binder. The lead PROTAC D16-M1P2 demonstrates dual mechanisms of PKMYT1 degradation and inhibition, with strong antiproliferative potency facilitated by high selectivity. It also exhibits favorable oral bioavailability, stronger pharmacodynamic effects relative to the PKMYT1 inhibitor alone, and robust antitumor response as a monotherapy in xenograft models. This PROTAC serves as a precise chemical probe to explore PKMYT1 biology and a promising lead for further cancer therapy exploration.

Indexed as

Antineoplastic AgentsAdaptor Proteins, Signal TransducingAnimalsCell Line, TumorCell ProliferationFemaleHumansMembrane ProteinsMiceNeoplasmsProtein Serine-Threonine KinasesProtein-Tyrosine KinasesProteolysisUbiquitin-Protein LigasesXenograft Model Antitumor AssaysAdaptor Proteins, Signal TransducingAntineoplastic AgentsCRBN protein, humanMembrane ProteinsPKMYT1 protein, humanProtein Serine-Threonine KinasesProtein-Tyrosine KinasesUbiquitin-Protein Ligases

Identifiers

PMID41315240
PMCPMC12663101

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.