Evidence map›Paper›PMID 41314213›Full record

ArticleStructure (London, England : 1993)2026

Cryo-EM structures of HBV capsids from human cells at near-atomic resolution.

Emily N Bianchini, Carolina Pérez-Segura, Haitao Liu, Laura Luckenbaugh, John Flanagan, Yuanheng Cai, John Shanklin, Adam Zlotnick, Jodi A Hadden-Perilla, Jianming Hu and 1 more

Abstract read
In one paragraph

Article in Structure (London, England : 1993), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Emily N BianchiniDepartment of Cell and Biological Systems, Pennsylvania State College of Medicine, Hershey, PA, USA.
Carolina Pérez-SeguraDepartment of Chemistry and Biochemistry, University of Delaware, Newark, DE, USA.
Haitao LiuDepartment of Cell and Biological Systems, Pennsylvania State College of Medicine, Hershey, PA, USA.
Laura LuckenbaughDepartment of Cell and Biological Systems, Pennsylvania State College of Medicine, Hershey, PA, USA.
John FlanaganDepartment of Molecular and Precision Medicine, Pennsylvania State College of Medicine, Hershey, PA, USA.
Yuanheng CaiDepartment of Biology, Brookhaven National Laboratory, Upton, NY 11973, USA.
John ShanklinDepartment of Biology, Brookhaven National Laboratory, Upton, NY 11973, USA.
Adam ZlotnickMolecular and Cellular Biochemistry Department, Indiana University, Bloomington, IN, USA.
Jodi A Hadden-PerillaDepartment of Chemistry and Biochemistry, University of Delaware, Newark, DE, USA.
Jianming HuDepartment of Cell and Biological Systems, Pennsylvania State College of Medicine, Hershey, PA, USA. Electronic address: juh13@psu.edu.
Joseph C-Y WangDepartment of Cell and Biological Systems, Pennsylvania State College of Medicine, Hershey, PA, USA. Electronic address: joewang@psu.edu.

Funding

Predictive Modeling & Optimal Control Framework for Model-Based Epidemic Response in DelawareP20GM103446 · NIGMS · UNIVERSITY OF DELAWARE · PI Shawn W Polson · 2012 to 2026
$67.2M
This renovation project will create over 1455 sq. ft. of state- of-the-art reseaP20GM104316 · NIGMS · UNIVERSITY OF DELAWARE · PI FOX, JOSEPH M · 2014 to 2024
$26.8M
Multimode Observation of Virus Capsid AssemblyR01AI118933 · NIAID · TRUSTEES OF INDIANA UNIVERSITY · PI Adam Zlotnick · 2016 to 2026
$4.0M
Mechanisms of Hepadnavirus Assembly and ReplicationR37AI043453 · NIAID · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI Jianming Hu · 2018 to 2026
$3.8M
Structural characterization of native HBV capsids and virions from human cellsR01AI173104 · NIAID · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI Joseph Che-Yen Wang · 2023 to 2026
$2.8M
Data Management and Storage System for Shared Resource FacilitiesS10OD028725 · OD · UNIVERSITY OF DELAWARE · PI POLSON, SHAWN W · 2021 to 2021
$600k
NIAID NIH HHS R01 AI118933NIAID NIH HHS R01 AI173104NIAID NIH HHS R37 AI043453NIGMS NIH HHS P20 GM103446NIGMS NIH HHS P20 GM104316NIH HHS S10 OD028725
6 · The paper itself

Abstract

HBV causes chronic infections that can lead to severe liver disease, yet current treatments rarely achieve a cure. The HBV capsid is a critical therapeutic target, but structural insights have largely relied on E. coli-derived particles lacking native modifications. Here, we present near-atomic resolution cryo-electron microscopy (EM) structures of HBV capsids purified from human embryonic kidney (HEK-293T) cells, capturing authentic architecture and post-translational modifications. A hydrophobic pocket at the intradimer interface harbors lipid-like densities corresponding to stearic and palmitic acids, confirmed by gas chromatography-mass spectrometry. Molecular dynamics simulations revealed that pocket accessibility is regulated by rotamer states of Lys96, Phe97, and Gln99, supporting an induced fit model of fatty acid binding. Reduced phosphorylation and increased RNA content further modulate capsid conformation and pocket openness. These findings highlight the dynamic regulation of HBV capsid structure and provide a framework for understanding how capsid conformational dynamics contribute to viral assembly and envelopment.

Indexed as

CapsidCapsid ProteinsHepatitis B virusCryoelectron MicroscopyHEK293 CellsHumansMolecular Dynamics SimulationPhosphorylationCapsid Proteinscapsid assemblycapsid proteincryo-EMempty capsidfatty acidhepatitis B virushydrophobic pocketmolecular dynamics simulationspocket factorsingle particle analysis

Identifiers

PMID41314213
PMCPMC12668219

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.