Evidence map›Paper›PMID 41313716›Full record

ReviewFEBS letters2026

Interplay between circadian and other transcription factors-Implications for cycling transcriptome reprogramming.

Xinyu Y Nie, Jerome S Menet

Abstract readReview
In one paragraph

Review in FEBS letters, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Xinyu Y NieDepartment of Biology, Center for Biological Clock Research, Texas A&M University, College Station, TX, USA.
Jerome S MenetDepartment of Biology, Center for Biological Clock Research, Texas A&M University, College Station, TX, USA.ORCID 0000-0002-7682-0967

Funding

Regulation of circadian physiology by rhythmic food intake and the mTOR pathwayR01DK128133 · NIDDK · TEXAS A&M UNIVERSITY · PI Jerome Menet · 2022 to 2026
$1.8M
Cooperation between transcription factors and its role in the regulation of rhythmic enhancer activity by the circadian clockR01GM145737 · NIGMS · TEXAS A&M UNIVERSITY · PI MENET, JEROME · 2022 to 2025
$1.3M
NIDDK NIH HHS R01 DK128133NIGMS NIH HHS R01 GM145737
6 · The paper itself

Abstract

Circadian transcription factors (TFs) orchestrate daily rhythms in gene expression to drive rhythmic biological functions. In mammals, this system relies on the TF CLOCK:BMAL1, which binds E-boxes to initiate rhythmic transcription. While traditionally viewed as a master activator, CLOCK:BMAL1 is now recognized to engage in additional regulatory functions that are essential for its activity. This perspective focuses on the mammalian circadian clock and integrates genomic, structural, and single-molecule footprinting data to highlight emerging insights into how CLOCK:BMAL1 regulates chromatin architecture, cooperates with other TFs, and coordinates complex enhancer dynamics. We propose an updated framework for how circadian TFs operate within dynamic and multifactorial chromatin landscapes, and prime cis-regulatory elements for rhythmic transcriptional bursts. We also discuss how this framework underlies circadian reprogramming and transcriptional plasticity.

Indexed as

Circadian ClocksCircadian RhythmCLOCK ProteinsTranscription FactorsTranscriptomeAnimalsChromatinGene Expression RegulationHumansChromatinCLOCK ProteinsTranscription FactorsCircadian clockscis‐regulatory elementsCLOCK:BMAL1nucleosomereprogrammingsingle‐molecule footprintingtranscriptiontranscription factor cooperativity

Identifiers

PMID41313716
PMCPMC13022748

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.