Evidence map›Paper›PMID 41313188›Full record

ArticleMicrobiology spectrum2026

Comprehensive genomic analysis of a novel

Maryam Safari, Samira Ghahroodian, Mohammad Vahid Abyarazimi, Samira Rahmaniyan, Fatemeh Heydaryan, Marzieh Rezaei, Bagher Yakhchali

Abstract read
In one paragraph

Article in Microbiology spectrum, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Maryam SafariDepartment of Biology, Faculty of Science, Nour Danesh Institute of Higher Education, Meymeh, Iran.ORCID 0000-0002-8669-7296
Samira GhahroodianDepartment of Biology, Faculty of Science, Nour Danesh Institute of Higher Education, Meymeh, Iran.
Mohammad Vahid AbyarazimiDepartment of Biology, Faculty of Science, Nour Danesh Institute of Higher Education, Meymeh, Iran.
Samira RahmaniyanDepartment of Biology, Faculty of Science, Nour Danesh Institute of Higher Education, Meymeh, Iran.
Fatemeh HeydaryanDepartment of Biology, Faculty of Science, Nour Danesh Institute of Higher Education, Meymeh, Iran.
Marzieh RezaeiDepartment of Biology, Faculty of Science, Nour Danesh Institute of Higher Education, Meymeh, Iran.
Bagher YakhchaliDepartment of Biology, Faculty of Science, Nour Danesh Institute of Higher Education, Meymeh, Iran.ORCID 0000-0003-4031-877X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Environmental pollution treatment is a worldwide challenge. Biological treatments are preferred to remedy the pollutants owing to higher efficiency and biocompatibility. Here, 18 indigenous bacterial strains with the usability of toluene as the sole carbon and energy source were screened, resulting in the selection of one isolate that was most capable of removing toluene. This isolate was characterized as a rod-shaped, gram-positive, spore-forming, halotolerant, catalase-positive, motile bacterium. The optimal temperature (40°C), pH (8), and NaCl concentration (50 g/L) for toluene removal were determined. Then, the experiment with four variables (petrochemical effluent dilution, carbon source, minerals, and amount of municipal wastewater) was designed using a Taguchi L16 orthogonal array. Ultimately, a 38.15% chemical oxygen demand decrease, as the best removal efficiency, was achieved. Gas chromatography-mass spectrometry analysis of bacterial metabolites assisted in recognizing the toluene degradation products, such as acetate and 2-propanone, indicating a meta-pathway of toluene decomposition. Next-generation sequencing strategy followed by core/pan-genome analysis indicated that the genome of the strain encompasses an assembly size of 5,154,622 bp with a content of 35.34% comprising 3,437 core and 2,258 accessory genes. Phylogenetic and multi-locus sequence typing studies confirmed that the strain belongs to the genus IMPORTANCE: The purpose of the present study was to develop a feasible process for the treatment of heavily contaminated Mahshahr petrochemical effluent. Since regular treatment of this effluent was inefficient, isolation of an indigenous bacterium with the ability to decompose toluene (the main pollutant of the effluent) and use it as a biological material to treat wastewater containing aromatic compounds on an industrial scale was very important.

Indexed as

Bacillus cereusTolueneBiodegradation, EnvironmentalGenome, BacterialGenomicsPhylogenyWastewaterTolueneWastewaterBacillus cereusbioremediationmeta-cleavage pathwaypan-genome analysisTaguchi methodtoluene

Identifiers

PMID41313188
PMCPMC12772314

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.