Evidence map›Paper›PMID 41311308›Full record

ArticleMolecular biology and evolution2025

Selection Estimation from Genetic Time-Series Data: Effects of Limited Sampling and Genetic Drift.

Qingbei Cheng, Muhammad Saqib Sohail, Matthew R McKay

Abstract read
In one paragraph

Article in Molecular biology and evolution, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Qingbei ChengDepartment of Electronic and Computer Engineering, Hong Kong University of Science and Technology, Hong Kong SAR, China.ORCID 0000-0001-9244-6816
Muhammad Saqib SohailDepartment of Computer Science, Bahria University, Lahore, Pakistan.ORCID 0000-0001-9096-7634
Matthew R McKayDepartment of Electrical and Electronic Engineering, University of Melbourne, Melbourne, VIC, Australia.ORCID 0000-0002-8086-2545

Funding

Australian GovernmentAustralian Research Council DP 230102850
6 · The paper itself

Abstract

Estimating selection from genetic time-series data is fundamental to understanding evolutionary dynamics. Accurate selection inference is confounded by multiple noise sources, including limited sampling of populations and genetic drift. To characterize how these uncertainties collectively affect estimator performance, we analyze a mathematically tractable selection coefficient estimator derived under the marginal path likelihood (MPL) framework. We identify a parameter, the integrated mutant allele variance, as a key quantity determining estimator precision. Our analysis reveals that variance integration mitigates sampling and genetic drift errors at different rates, with drift typically becoming the dominant source of error in longer trajectories. The increased robustness of MPL-based estimation to sampling is surprising, since MPL is derived from a model that neglects this effect. Our findings offer insights into how incorporating temporal information reduces multiple sources of noise when estimating selection coefficients.

Indexed as

Genetic DriftModels, GeneticSelection, GeneticLikelihood Functionsgenetic driftinferencelimited samplingselectiontime-series

Identifiers

PMID41311308
PMCPMC13223747

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.