Evidence map›Paper›PMID 41310986›Full record

ArticleAngewandte Chemie (International ed. in English)2026

Live-Cell RNA Imaging via Clickable TriPPPro Nucleotide Reporters.

J Iven H Knaack, Eileen List, Dörte Stalling, Vincente T Sterrenberg, Chris Meier, Hans-Achim Wagenknecht, Jens B Bosse

Abstract read
In one paragraph

Article in Angewandte Chemie (International ed. in English), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Fluorogenic Sydnones for Bioorthogonal Labeling of DNA.Chemistry (Weinheim an der Bergstrasse, Germany) · 2026
    Article
  2. Review
  3. Live-Cell RNA Imaging via Clickable TriPPPro Nucleotide Reporters.Angewandte Chemie (International ed. in English) · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

J Iven H Knaack *Organic Chemistry, Department of Chemistry, Faculty of Sciences, University of Hamburg, Martin-Luther-King-Platz 6, 20146, Hamburg, Germany.
Eileen List *Institute of Organic Chemistry, Karlsruher Institute of Technology (KIT), Fritz-Haber-Weg 6, 76131, Karlsruhe, Germany.
Dörte Stalling *Centre for Structural Systems Biology (CSSB), Notkestraße 85, Building 15, 22607, Hamburg, Germany.
Vincente T SterrenbergOrganic Chemistry, Department of Chemistry, Faculty of Sciences, University of Hamburg, Martin-Luther-King-Platz 6, 20146, Hamburg, Germany.ORCID 0000-0002-8308-067X
Chris MeierOrganic Chemistry, Department of Chemistry, Faculty of Sciences, University of Hamburg, Martin-Luther-King-Platz 6, 20146, Hamburg, Germany.ORCID 0000-0002-8323-5635
Hans-Achim WagenknechtInstitute of Organic Chemistry, Karlsruher Institute of Technology (KIT), Fritz-Haber-Weg 6, 76131, Karlsruhe, Germany.ORCID 0000-0003-4849-2887
Jens B BosseCentre for Structural Systems Biology (CSSB), Notkestraße 85, Building 15, 22607, Hamburg, Germany.

Funding

Deutsche Forschungsgemeinschaft 413831413Deutsche Forschungsgemeinschaft EXC2155-390874280Deutsche Forschungsgemeinschaft FOR5200DEEP-DV(443644894)BO4158/5-1Deutsche Forschungsgemeinschaft Me1161/17-1Deutsche Forschungsgemeinschaft RTG2771-453548970Deutsche Forschungsgemeinschaft RTG2887-497350882Deutsche Forschungsgemeinschaft SFB1648/12024-512741711Deutsche Forschungsgemeinschaft Wa1386/22-2Wellcome TrustWellcome Trust 209250/Z/17/Z
6 · The paper itself

Abstract

Understanding RNA synthesis and dynamics in cells requires efficient labeling strategies that are not only compatible with cellular environments but can be performed in living cells. We developed a robust, bio-orthogonal approach for live-cell RNA labeling using TriPPPro (triphosphate prodrug) chemistry. This strategy enables the intracellular delivery of sterically demanding nucleoside triphosphates modified with inverse electron-demand Diels-Alder (IEDDA)-reactive groups, specifically trans-cyclooctene (2TCOa) and bicyclo[6.1.0]nonyne (BCN). Once hydrolyzed inside cells, these TriPPPro-modified uridines and cytidines are metabolically incorporated into nascent RNA by endogenous RNA polymerases. Subsequent IEDDA reaction with a dual-fluorogenic tetrazine-cyanine styryl dye conjugate allows wash-free, high-contrast imaging of RNA synthesis in cells. We demonstrate efficient RNA labeling, including nucleolar localization and specificity for newly transcribed RNA, validated by transcriptional inhibition and colocalization with ribosomal RNA. Comparative analyses confirm that TriPPPro delivery surpasses conventional transporter-based systems in both labeling efficiency and cellular compatibility. This platform offers a modular, non-genetic, and highly specific method for real-time RNA imaging, with broad applicability for RNA biology and antiviral research.

Indexed as

NucleotidesRNAClick ChemistryCycloaddition ReactionFluorescent DyesHeLa CellsHumansFluorescent DyesNucleotidesRNAClick‐chemistryLive‐cell ImagingNucleotidesRNA LabelingTriPPPro‐compounds

Identifiers

PMID41310986
PMCPMC12790367

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.