Evidence map›Paper›PMID 41310462›Full record

ArticleBMC plant biology2025

Integrated metabolome and transcriptome analysis provides insights into anthocyanin biosynthesis in Portulaca oleracea.

Mingzhao Zhu, Hanying Wu, Yiqian Fu, Linlin You, Caiyun Yang, Ran Zhao, Xiangyang Han

Abstract read
In one paragraph

Article in BMC plant biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

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0cells of the map it votes in
2citing papers in PubMed
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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Mingzhao Zhu *State Key Laboratory of Vegetable Biobreeding, Beijing Key Laboratory of Crop Molecular Design and Intelligent Breeding, Key Laboratory of Biology and Genetics Improvement of Horticultural Crops (North China), National Engineering Research Center for Vegetables, Beijing Vegetable Research Center, Beijing Academy of Agricultural and Forestry Sciences, Beijing, 100097, China.
Hanying Wu *Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, The Chinese Academy of Sciences, Beijing, 100093, China.
Yiqian FuState Key Laboratory of Vegetable Biobreeding, Beijing Key Laboratory of Crop Molecular Design and Intelligent Breeding, Key Laboratory of Biology and Genetics Improvement of Horticultural Crops (North China), National Engineering Research Center for Vegetables, Beijing Vegetable Research Center, Beijing Academy of Agricultural and Forestry Sciences, Beijing, 100097, China.
Linlin YouState Key Laboratory of Vegetable Biobreeding, Beijing Key Laboratory of Crop Molecular Design and Intelligent Breeding, Key Laboratory of Biology and Genetics Improvement of Horticultural Crops (North China), National Engineering Research Center for Vegetables, Beijing Vegetable Research Center, Beijing Academy of Agricultural and Forestry Sciences, Beijing, 100097, China.
Caiyun YangState Key Laboratory of Vegetable Biobreeding, Beijing Key Laboratory of Crop Molecular Design and Intelligent Breeding, Key Laboratory of Biology and Genetics Improvement of Horticultural Crops (North China), National Engineering Research Center for Vegetables, Beijing Vegetable Research Center, Beijing Academy of Agricultural and Forestry Sciences, Beijing, 100097, China.
Ran ZhaoState Key Laboratory of Plant Diversity and Specialty Crops, Institute of Botany, The Chinese Academy of Sciences, Beijing, 100093, China. zhaoran@ibcas.ac.cn.
Xiangyang HanState Key Laboratory of Vegetable Biobreeding, Beijing Key Laboratory of Crop Molecular Design and Intelligent Breeding, Key Laboratory of Biology and Genetics Improvement of Horticultural Crops (North China), National Engineering Research Center for Vegetables, Beijing Vegetable Research Center, Beijing Academy of Agricultural and Forestry Sciences, Beijing, 100097, China. hanxiangyang@nercv.org.

Funding

Innovation and Development Program of Beijing Vegetable Research Center KYCX202302National Horticulture Germplasm Resources Center NHGRC2025-NHC02the Scientific and technological innovation capacity building project of BAAFS KJCX20251008
6 · The paper itself

Abstract

backgroundPigment synthesis pathways in Caryophyllales have long been debated, with uncertainties surrounding the biosynthesis and regulation of anthocyanins in representative species. Portulaca oleracea provides a suitable model to clarify these mechanisms, which is valuable for understanding pigment metabolism and informing molecular breeding within Caryophyllales.

resultsUsing a systematic multi-omics approach, we elucidated the anthocyanin biosynthesis mechanism in P. oleracea. Peonidin-3-O-glucoside was identified as the predominant anthocyanin component, and its abundance closely correlated with organ-specific coloration. We identified twenty-one key structural genes in the anthocyanin pathway (including CHS, DFR, ANS, and UFGT) and eleven transcription factors regulating anthocyanin accumulation, all showing distinct tissue-specific expression patterns. Notably, although the canonical anthocyanin transporter TT19 is absent in P. oleracea, a GST family gene (evm.TU.LG12.1168) was strongly associated with anthocyanin accumulation, suggesting a potential role in vacuolar transport.

conclusionsThis work establishes a systematic molecular framework for anthocyanin biosynthesis and regulation in P. oleracea, highlights peonidin-3-O-glucoside as the primary pigment determinant of organ coloration, and proposes a GST-mediated transport mechanism in the absence of TT19. These findings offer theoretical insights for pigment metabolism research and provide a foundation for molecular breeding strategies across Caryophyllales.

Indexed as

AnthocyaninsMetabolomePortulacaTranscriptomeGene Expression ProfilingGene Expression Regulation, PlantPlant ProteinsAnthocyaninsPlant ProteinsAnthocyaninGSTMetabolomePortulaca oleracea

Identifiers

PMID41310462
PMCPMC12752247

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.