Evidence map›Paper›PMID 41310433›Full record

ArticleBMC microbiology2025

Integrated genomic and mutagenesis analysis of Pseudomonas argentinensis SA190 reveals mechanisms of plant root colonization and stress resilience.

Büsra Elkatmis, Sabiha Parween, Abdul Aziz Eida, Rewaa Jalal, Feras Lafi, Intikhab Alam, Stanislav Kopriva, Heribert Hirt, Maged M Saad

Abstract read
In one paragraph

Article in BMC microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Büsra ElkatmisDARWIN21, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia.
Sabiha ParweenDARWIN21, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia.
Abdul Aziz EidaDARWIN21, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia.
Rewaa JalalDepartment of Biological Sciences, College of Sciences, University of Jeddah, Jeddah, 21493, Saudi Arabia.
Feras LafiCollege of Natural and Health Sciences, Zayed University, Dubai, United Arab Emirates.
Intikhab AlamComputational Bioscience Research Center, Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Kingdom of Saudi Arabia.
Stanislav KoprivaInstitute for Plant Sciences, Cluster of Excellence on Plant Sciences, University of Cologne, Zülpicher Str. 47b, Cologne, 50674, Germany.
Heribert HirtDARWIN21, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia. Heribert.hirt@kaust.edu.sa.ORCID 0000-0003-3119-9633
Maged M SaadDARWIN21, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia. Maged.saad@kaust.edu.sa.ORCID 0000-0002-5655-8674

Funding

Deutsche Forschungsgemeinschaft EXC 2048/1 - project 390686111Global Collaborative Research, King Abdullah University of Science and Technology BAS/1/1062-01-01
6 · The paper itself

Abstract

backgroundPseudomonas argentinensis SA190 is a desert-adapted, plant-associated bacterium with demonstrated potential to enhance plant growth under abiotic stress. In this study, we conducted a comprehensive genomic and functional characterization of SA190 to uncover the molecular mechanisms underlying its biofilm formation, root colonization, and plant growth-promoting traits.

resultsThe SA190 genome consists of a single circular chromosome (5.07 Mb, 64% GC) encoding 4561 predicted ORFs. Functional annotation revealed genes related to phosphate solubilization (pqq operon), antifungal activity, and stress mitigation, including ACC deaminase. AntiSMASH analysis identified eight biosynthetic gene clusters linked to secondary metabolite production, including siderophores, terpenes, and β-lactones. Metabolic profiling demonstrated selective utilization of root exudate-associated sugars, consistent with rhizosphere adaptation. By a Tn5 transposon mutagenesis approach, we identified key regulators required for biofilm formation. Biofilm mutants deficient in wspC, rpoE, and fliD were differentially compromised in plant colonization and plant growth promotion under ambient and/or drought conditions.

conclusionOur study suggests that SA190 is a metabolically streamlined yet ecologically versatile PGPB and provides functional insights into its potential application as a bioinoculant for sustainable agriculture in arid environments.

Indexed as

Plant RootsPseudomonasStress, PhysiologicalBacterial ProteinsBiofilmsGenome, BacterialGenomicsMultigene FamilyMutagenesisRhizosphereBacterial ProteinsBiofilm formation and sustainable agricultureDrought toleranceTransposon mutagenesis

Identifiers

PMID41310433
PMCPMC12659591

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.