Evidence map›Paper›PMID 41309650›Full record

ArticleNature communications2025

Effect of the S2' site cleavage on SARS-CoV-2 spike.

Wei Shi, G M Jonaid, Md Golam Kibria, Jacob Allen, Hanqin Peng, Sophia Rits-Volloch, Haisun Zhu, Shaowei Wang, Richard M Walsh, Jianming Lu and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. TMPRSS2-mediated coronavirus spike activation and inhibition.Nature structural & molecular biology · 2026
    Article
  6. COVID-19, the disease that changed the world.Medicine and pharmacy reports · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Wei Shi *Division of Molecular Medicine, Boston Children's Hospital, Boston, MA, USA. wshi@crystal.harvard.edu.ORCID 0000-0002-0741-6813
G M Jonaid *Division of Molecular Medicine, Boston Children's Hospital, Boston, MA, USA.
Md Golam Kibria *Division of Molecular Medicine, Boston Children's Hospital, Boston, MA, USA.ORCID 0000-0001-9973-4933
Jacob AllenDivision of Molecular Medicine, Boston Children's Hospital, Boston, MA, USA.ORCID 0009-0009-3752-299X
Hanqin PengDivision of Molecular Medicine, Boston Children's Hospital, Boston, MA, USA.ORCID 0000-0002-5357-8215
Sophia Rits-VollochDivision of Molecular Medicine, Boston Children's Hospital, Boston, MA, USA.
Haisun ZhuInstitute for Protein Innovation, Harvard Institutes of Medicine, Boston, MA, USA.
Shaowei WangDexorgen Inc., Rockville, MD, USA.
Richard M WalshThe Harvard Cryo-EM Center for Structural Biology, Boston, MA, USA.ORCID 0000-0002-8939-8988
Jianming LuDexorgen Inc., Rockville, MD, USA.
Bing ChenDivision of Molecular Medicine, Boston Children's Hospital, Boston, MA, USA. bchen@crystal.harvard.edu.ORCID 0000-0002-8625-1657

Funding

Structure-function studies of the membrane-interacting domains of HIV-1 Env spikeR01AI127193 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI CHEN, BING, HARRISON, STEPHEN COPLAN · 2016 to 2025
$8.4M
Structure of the full-length spike protein of SARS-CoV-2 in the context of membraneR01AI147884 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI CHEN, BING · 2020 to 2024
$3.4M
NIAID NIH HHS R01 AI127193NIAID NIH HHS R01 AI147884U.S. Department of Health & Human Services | National Institutes of Health (NIH) AI127193
6 · The paper itself

Abstract

SARS-CoV-2 initiates infection of host cells by fusing its envelope lipid bilayer with the cell membrane. To overcome kinetic barriers for membrane fusion, the virus-encoded spike (S) protein refolds from a metastable prefusion state to a lower energy, stable postfusion conformation. The protein is first split into S1 and S2 fragments at a proteolytic site after synthesis, and presumably further cleaved at a second site, known as the S2' site, before membrane fusion can occur. Here, we report a cryo-EM structure of S2 fragment after the S2' cleavage, possibly representing a late fusion intermediate conformation, in which the fusion peptide and transmembrane segment have yet to pack together, distinct from the final, postfusion state. Functional assays demonstrate that the S2' cleavage accelerates membrane fusion, probably by stabilizing membrane fusion intermediates. These results advance our understanding of SARS-CoV-2 entry and may guide intervention strategies against pathogenetic coronaviruses.

Indexed as

SARS-CoV-2Spike Glycoprotein, CoronavirusCOVID-19Cryoelectron MicroscopyHumansMembrane FusionModels, MolecularProtein ConformationProteolysisVirus InternalizationSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2

Identifiers

PMID41309650
PMCPMC12748737

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.