Evidence map›Paper›PMID 41309605›Full record

ArticleNature communications2025

Roles of histone chaperone Nap1 and histone acetylation in regulating phase-separation of nucleosome arrays.

Jia Gao, Hongyun Li, Song Tan, Ruobo Zhou, Tae-Hee Lee

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Jia GaoDepartment of Chemistry, The Pennsylvania State University, University Park, PA, USA.ORCID http://orcid.org/0000-0003-3463-993X
Hongyun LiDepartment of Chemistry, The Pennsylvania State University, University Park, PA, USA.
Song TanDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, USA.ORCID http://orcid.org/0000-0002-6698-8475
Ruobo ZhouDepartment of Chemistry, The Pennsylvania State University, University Park, PA, USA.ORCID http://orcid.org/0000-0001-8628-0282
Tae-Hee LeeDepartment of Chemistry, The Pennsylvania State University, University Park, PA, USA. txl18@psu.edu.ORCID http://orcid.org/0000-0003-2034-6394

Funding

Structural studies of chromatin complexesR35GM127034 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI SONG TAN · 2018 to 2026
$4.8M
Dynamics of DNA-histone interactionsR35GM148208 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI Tae-Hee Lee · 2023 to 2026
$2.5M
Deciphering the functional role of actin-spectrin-based membrane skeleton in subcellular compartmentalization of signaling proteins and cell signal transductionR35GM142973 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI ZHOU, RUOBO · 2021 to 2025
$2.2M
Lumicks C-Trap Single-Molecule System: Correlated Dual Optical Tweezers and Confocal Fluorescence MicroscopyS10OD038190 · OD · PENNSYLVANIA STATE UNIVERSITY, THE · PI YENNAWAR, NEELA H. · 2025 to 2025
$750k
Beckman Optima Multiwavelength Analytical UltracentrifugeS10OD032215 · OD · PENNSYLVANIA STATE UNIVERSITY, THE · PI YENNAWAR, NEELA H. · 2022 to 2022
$512k
NIGMS NIH HHS R35 GM127034NIGMS NIH HHS R35 GM142973NIGMS NIH HHS R35 GM148208NIH HHS S10 OD032215NIH HHS S10 OD038190U.S. Department of Health & Human Services | National Institutes of Health (NIH) R35GM127034U.S. Department of Health & Human Services | National Institutes of Health (NIH) R35GM142973U.S. Department of Health & Human Services | National Institutes of Health (NIH) R35GM148208
6 · The paper itself

Abstract

Chromatin condensation is dynamically regulated throughout the cell cycle and plays key roles in modulating gene accessibility. The DNA-histone dynamics in the nucleosome are central to the regulation mechanisms of chromatin condensation, which remain poorly understood. Employing fluorescence recovery after photobleaching, optical super-resolution imaging, and microrheology with optical tweezers, we investigated the roles of various parameters in regulating phase-separation of 12-mer nucleosome arrays. Here, we show that histone H4 tail lysine residues are the main drivers of liquid-liquid phase separation of nucleosome arrays. We also show that the condensed liquid-like droplets comprise a mobile fraction and a relatively immobile structural scaffold. Histone chaperone Nap1 and histone H3 tail acetylation enhance DNA-histone dynamics within this scaffold, thereby lowering the overall viscosity of the droplets. These results suggest that histone chaperone and histone H3/H4 tails play critical roles in regulating chromatin condensation and gene accessibility in condensed chromatin.

Indexed as

HistonesNucleosome Assembly Protein 1NucleosomesSaccharomyces cerevisiae ProteinsAcetylationChromatinChromatin Assembly and DisassemblyDNAFluorescence Recovery After PhotobleachingHistone ChaperonesHumansLysineOptical TweezersChromatinDNAHistone ChaperonesHistonesLysineNucleosome Assembly Protein 1NucleosomesSaccharomyces cerevisiae Proteins

Identifiers

PMID41309605
PMCPMC12661029

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.