Evidence map›Paper›PMID 41309545›Full record

ArticleNature communications2025

Deleterious variants in the autophagy-related gene RB1CC1/FIP200 impair immunity to SARS-CoV-2.

Lili Hu, Renee M van der Sluis, Kennith Brian Castelino, Bao-Cun Zhang, Andreas Ronit, Thomas Zillinger, Marvin Werner, Sofie Eg Jørgensen, Anne Louise Hansen, Alice Pedersen and 11 more

Abstract readCase Reports
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Lili HuDepartment of Biomedicine, Aarhus University, Aarhus, Denmark.ORCID http://orcid.org/0009-0000-2653-1713
Renee M van der Sluis *Department of Biomedicine, Aarhus University, Aarhus, Denmark.ORCID http://orcid.org/0000-0002-7668-2517
Kennith Brian Castelino *Department of Biomedicine, Aarhus University, Aarhus, Denmark.ORCID http://orcid.org/0009-0003-7249-9306
Bao-Cun ZhangDepartment of Biomedicine, Aarhus University, Aarhus, Denmark.ORCID http://orcid.org/0000-0001-6104-0848
Andreas RonitDepartment of Infectious Diseases, Copenhagen University Hospital - Amager and Hvidovre Hospital, Hvidovre, Denmark.
Thomas ZillingerDepartment of Biomedicine, Aarhus University, Aarhus, Denmark.ORCID http://orcid.org/0000-0002-0866-4835
Marvin WernerDepartment of Biomedicine, Aarhus University, Aarhus, Denmark.ORCID http://orcid.org/0000-0003-1200-807X
Sofie Eg JørgensenDepartment of Biomedicine, Aarhus University, Aarhus, Denmark.
Anne Louise HansenDepartment of Biomedicine, Aarhus University, Aarhus, Denmark.
Alice PedersenDepartment of Biomedicine, Aarhus University, Aarhus, Denmark.ORCID http://orcid.org/0000-0003-4705-8050
Ryo NaritaDepartment of Biomedicine, Aarhus University, Aarhus, Denmark.ORCID http://orcid.org/0000-0003-2045-2509
Line S ReinertDepartment of Biomedicine, Aarhus University, Aarhus, Denmark.ORCID http://orcid.org/0000-0002-8317-0886
Bettina BundgaardDepartment of Biomedicine, Aarhus University, Aarhus, Denmark.
COVID Human Genetic Effort
Christian K HolmDepartment of Biomedicine, Aarhus University, Aarhus, Denmark.ORCID http://orcid.org/0000-0002-2655-3362
Aurelie CobatLaboratory of Human Genetics of Infectious Diseases, Necker Branch, Institut National de la Santé et de la Recherche Médicale (INSERM) U1163, Necker Hospital for Sick Children, Paris, France.ORCID http://orcid.org/0000-0001-7209-6257
Jean-Laurent CasanovaLaboratory of Human Genetics of Infectious Diseases, Necker Branch, Institut National de la Santé et de la Recherche Médicale (INSERM) U1163, Necker Hospital for Sick Children, Paris, France.
Fulvio Reggiori *Department of Biomedicine, Aarhus University, Aarhus, Denmark.
Muriel Mari *Department of Biomedicine, Aarhus University, Aarhus, Denmark.ORCID http://orcid.org/0000-0002-2677-6945
Søren R PaludanDepartment of Biomedicine, Aarhus University, Aarhus, Denmark.ORCID http://orcid.org/0000-0001-9180-4060
Trine H MogensenDepartment of Biomedicine, Aarhus University, Aarhus, Denmark. Trine.mogensen@biomed.au.dk.ORCID http://orcid.org/0000-0002-1853-9704

Funding

Developing, Demonstrating, and Disseminating Innovative Programs to Achieve Translational SuccessUL1TR001866 · NCATS · ROCKEFELLER UNIVERSITY · PI COLLER, BARRY, KRUEGER, JAMES G · 2016 to 2025
$40.6M
Monogenic basis of resistance to SARS-CoV2 and predisposition to severe COVID-19R01AI088364 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI Jean-Laurent Casanova, Shen-Ying Zhang · 2010 to 2026
$8.7M
Inborn errors of immunity in patients with life-threatening COVID-19R01AI163029 · NIAID · ROCKEFELLER UNIVERSITY · PI CASANOVA, JEAN-LAURENT, ZHANG, QIAN · 2021 to 2025
$3.7M
NCATS NIH HHS UL1 TR001866NIAID NIH HHS R01 AI088364NIAID NIH HHS R01 AI163029Novo Nordisk Fonden (Novo Nordisk Foundation) NNF21OC0067157
6 · The paper itself

Abstract

The clinical outcome of SARS-CoV-2 infection spans from asymptomatic viral elimination to lethal COVID-19 pneumonia, which is due to type I interferon (IFN) deficiency in at least 15-20% of cases. We report two unrelated male patients with critical COVID-19 who are heterozygous for rare deleterious variants in RB1CC1, encoding the autophagy-related FIP200 protein. Airway epithelial cells genetically deprived of FIP200 or cell lines expressing the RB1CC1/FIP200 patient variants exhibit elevated SARS-CoV-2 replication and impaired autophagic flux. The antiviral function of FIP200 is independent of canonical autophagy and type I IFN, but involves the selective autophagy receptor NDP52. We identify a non-canonical function of FIP200 in a novel lysosomal degradation pathway, in which SARS-CoV-2 virions are targeted to single-membrane compartments for degradation of viral RNA in LC3B-positive acidified vesicles. This pathway is impaired in FIP200-deficient cells and in cells expressing FIP200 patient haplotypes. Collectively, we describe a cell-autonomous anti-SARS-CoV-2 restriction pathway, dependent on FIP200 and NDP52, and independent of canonical autophagy and type I IFN, which can underlie critical COVID-19 pneumonia.

Indexed as

AutophagyAutophagy-Related ProteinsCOVID-19SARS-CoV-2HumansInterferon Type ILysosomesMaleMiddle AgedVirus ReplicationAutophagy-Related ProteinsInterferon Type IRB1CC1 protein, human

Identifiers

PMID41309545
PMCPMC12660716

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.