Evidence map›Paper›PMID 41305409›Full record

ArticlePathogens (Basel, Switzerland)2025

Disentangling the Causal Role of Gut Microbiota in Bacterial Liver Abscess: A Mendelian Randomization Study with Clinical Validation.

Jingrun Han, Han Yu, Haocheng Xue, Yifan Lu, Shuang Li, Qingkai Zhang, Jianjun Liu, Dong Shang

Abstract read
In one paragraph

Article in Pathogens (Basel, Switzerland), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jingrun HanDepartment of General Surgery, The First Affiliated Hospital of Dalian Medical University, Dalian 116011, China.ORCID 0000-0001-5840-6159
Han YuLaboratory of Integrative Medicine, The First Affiliated Hospital of Dalian Medical University, Dalian 116011, China.
Haocheng XueLaboratory of Integrative Medicine, The First Affiliated Hospital of Dalian Medical University, Dalian 116011, China.
Yifan LuDepartment of General Surgery, The First Affiliated Hospital of Dalian Medical University, Dalian 116011, China.
Shuang LiDepartment of General Surgery, The First Affiliated Hospital of Dalian Medical University, Dalian 116011, China.
Qingkai ZhangDepartment of General Surgery, The First Affiliated Hospital of Dalian Medical University, Dalian 116011, China.
Jianjun LiuDepartment of General Surgery, The First Affiliated Hospital of Dalian Medical University, Dalian 116011, China.
Dong ShangDepartment of General Surgery, The First Affiliated Hospital of Dalian Medical University, Dalian 116011, China.

Funding

Liaoning Province Science and Technology Plan Joint Program 2024-MSLH-120National Natural Science Foundation of China 82374248
6 · The paper itself

Abstract

Bacterial liver abscess (BLA), accounting for approximately 80% of all liver abscesses, is a severe suppurative infection of the liver. Although gut microbiota dysbiosis has been implicated in BLA pathogenesis, causal evidence remains limited. Here, we integrate Mendelian randomization (MR) and clinical cohort studies to systematically evaluate the causal role of gut microbiota in BLA. Using summary-level genetic data from MiBioGen, GWAS Catalog, and the Pan-UK Biobank, we identified several causal microbial taxa: Coprococcus, Veillonellaceae (including Dialister), and Klebsiella were positively associated with BLA risk, whereas Bacteroides and Bifidobacterium appeared protective. Clinical validation confirmed significant enrichment of Veillonella, Dialister, and Streptococcus in the gut and oral microbiota of BLA patients, contrasting with the predominance of Bacteroides and Bifidobacterium in healthy controls. Klebsiella was the most abundant genus in abscess pus, and gut microbial metabolic profiling revealed marked upregulation of glycolytic pathways in BLA patients. These results indicate that gut dysbiosis exacerbates BLA development through microenvironmental disruption and metabolic reprogramming. Our findings provide mechanistic insights into BLA etiology and suggest microbiota-targeted interventions as promising strategies for prevention and treatment.

Indexed as

DysbiosisGastrointestinal MicrobiomeLiver AbscessBacteriaHumansKlebsiellaMaleMendelian Randomization Analysis16S rDNA sequencingbacterial liver abscessbacterial metabolitesgut microbiota

Identifiers

PMID41305409
PMCPMC12655503

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.