Evidence map›Paper›PMID 41304541›Full record

ArticleToxics2025

Integrated Transcriptomic and Physiological and Biochemical Analysis Revealed Response Mechanism of Rice (

Lin Liu, Kang Wang, Shuiting Long, Wentao Li, Adili Batuer, Lei Wang, Tinjia Ma, Xiaohang Xu, Longchao Liang, Md Habibullah-Al-Mamun and 1 more

Abstract read
In one paragraph

Article in Toxics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Lin LiuCollege of Civil Engineering and Architecture, Xinjiang University, Urumqi 830047, China.ORCID 0009-0007-1390-1456
Kang WangCollege of Civil Engineering and Architecture, Xinjiang University, Urumqi 830047, China.
Shuiting LongDisease Prevention and Control Center of Qiandongnan Miao and Dong Autonomous Prefecture, Kaili 556099, China.
Wentao LiCollege of Civil Engineering and Architecture, Xinjiang University, Urumqi 830047, China.
Adili BatuerCollege of Civil Engineering and Architecture, Xinjiang University, Urumqi 830047, China.
Lei WangCollege of Environmental Science and Engineering, Institute of Pollution Control and Ecological Safety, Tongji University, Shanghai 200092, China.
Tinjia MaCollege of Civil Engineering and Architecture, Xinjiang University, Urumqi 830047, China.
Xiaohang XuKey Laboratory of Karst Georesources and Environment, Ministry of Education, College of Resources and Environmental Engineering, Guizhou University, Guiyang 550025, China.
Longchao LiangSchool of Chemistry and Materials Science, Guizhou Normal University, Guiyang 550025, China.
Md Habibullah-Al-MamunDepartment of Fisheries, Faculty of Biological Sciences, University of Dhaka, Dhaka 1000, Bangladesh.ORCID 0000-0001-9568-5361
Guangle QiuState Key Laboratory of Environmental Geochemistry, Institute of Geochemistry, Chinese Academy of Sciences, Guiyang 550081, China.

Funding

Guizhou Provincial Basic Research Program (Natural Science) ZK[2023]-256Guizhou science and technology supporting project Qiankehe [2020]1Y123National Natural Science Foundation of China 42363008the Research Fund for Higher Education Institutions of the Xinjiang Uygur Autonomous Region Education Department 202409120001the Xinjiang Uygur Autonomous Region "Tianchi Talents" introduction program young doctor project nothe Youth Science Foundation Project of Natural Science Foundation of Xinjiang Uygur Autonomous Region 2025D01C314
6 · The paper itself

Abstract

Methylmercury (MeHg), a pervasive environmental contaminant, poses significant human health risks due to its bioaccumulation in food chain, particularly through rice, a dietary staple for billions of people. Although extensive research has been conducted on the environmental cycling and health impacts of MeHg on rice, limited attention has been given to understanding the molecular and physiological responses to MeHg stress, which is crucial for elucidating the mechanisms of detoxification and adaptation. Herein, we conducted pot experiments of rice with varying MeHg concentrations of soil, followed by high-throughput sequencing and assessment of physiological and biochemical responses in order to evaluate the impacts of MeHg exposure on rice growth, stress tolerance, and underlying molecular mechanisms. The results showed that significant increases in root-to-stem translocation of MeHg occurred, further inducing oxidative stress, as evidenced by alterations in antioxidant enzyme activities (CAT, POD, and SOD), proline (PRO) content, and chlorophyll levels, resulting in cellular damage and stunted plant growth. Transcriptome analysis identified differentially expressed miRNAs (DE-miRNAs) in rice roots associated with metabolic regulation, signal transduction, biosynthesis, and plant-pathogen interactions. Notably, genes involved in starch and sucrose metabolism, the Target of Rapamycin (TOR) signaling pathways, and phenylpropanoid biosynthesis were found to be key in rice's response to MeHg toxicity. Protein-protein interaction (PPI) and miRNA-target gene analyses further highlighted genes encoding jasmonic acid-amido synthetase and FERONIA-like receptors as potential candidates for detoxification mechanisms. This study contributes to building the molecular regulation network and physiological underpinnings of rice's response to MeHg stress, providing insights into potential targets for genetic improvement to enhance rice's resilience to MeHg toxicity.

Indexed as

high-throughput sequencingmethylmercury (MeHg)miRNAphysiological and biochemical responsesrice

Identifiers

PMID41304541
PMCPMC12656331

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.