Evidence map›Paper›PMID 41304325›Full record

ArticleMicroorganisms2025

Co-Occurrence Patterns of Bacterial Communities and Resistance Genes: A Comprehensive Multi-Pen Fecal Microbiome and Resistome Study in Dairy Farms.

Adriana Garzon, Rafael Portillo-Gonzalez, Gregory Habing, Bart C Weimer, Cory Schlesener, Noelia Silva-Del-Rio, Betsy M Karle, Craig Miramontes, Richard V Pereira

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Microorganisms, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Adriana GarzonDepartment of Population Health and Reproduction, School of Veterinary Medicine, University of California, Davis, CA 95616, USA.ORCID 0000-0003-3464-6670
Rafael Portillo-GonzalezDepartment of Veterinary Preventive Medicine, College of Veterinary Medicine, The Ohio State University, Columbus, OH 43210, USA.ORCID 0000-0003-2181-2713
Gregory HabingDepartment of Veterinary Preventive Medicine, College of Veterinary Medicine, The Ohio State University, Columbus, OH 43210, USA.ORCID 0000-0002-0855-7650
Bart C WeimerDepartment of Population Health and Reproduction, School of Veterinary Medicine, University of California, Davis, CA 95616, USA.ORCID 0000-0002-7471-1978
Cory SchlesenerDepartment of Population Health and Reproduction, School of Veterinary Medicine, University of California, Davis, CA 95616, USA.ORCID 0000-0002-9329-8381
Noelia Silva-Del-RioDepartment of Population Health and Reproduction, School of Veterinary Medicine, University of California, Davis, CA 95616, USA.
Betsy M KarleCooperative Extension, Division of Agriculture and Natural Resources, University of California, Orland, CA 95963, USA.ORCID 0000-0003-1851-5427
Craig MiramontesDepartment of Population Health and Reproduction, School of Veterinary Medicine, University of California, Davis, CA 95616, USA.ORCID 0009-0003-6079-7576
Richard V PereiraDepartment of Population Health and Reproduction, School of Veterinary Medicine, University of California, Davis, CA 95616, USA.ORCID 0000-0003-2028-8761

Funding

USDA National Institute of Food and Agriculture 2018-68003-27466
6 · The paper itself

Abstract

Antimicrobial resistance (AMR) poses a critical public health threat, with rising multidrug resistance cases compromising treatment effectiveness. Knowledge about the resistome in dairy production systems remains limited, particularly regarding lactating cows. This study investigated the microbiome and resistome across the hospital, fresh, and mid-lactation pens on 18 conventional dairy farms in California and Ohio using shotgun metagenomic sequencing of pooled fecal samples. Pooled fecal pat samples were collected as part of a larger field study using a quasi-experimental design that assigned farms to the training intervention group (six per state) or the control group (three per state). For the training intervention group, farm worker(s), identified as having the task of diagnosing and treating adult cows on the farm, participated in a training program on antimicrobial stewardship practices. Pooled fecal samples (

Indexed as

antimicrobial resistancebovinemetagenomicsnext-generation sequencingresistome

Identifiers

PMID41304325
PMCPMC12654601

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.