Evidence map›Paper›PMID 41304214›Full record

ArticleMicroorganisms2025

Genome Mining Reveals Pathways for Terpene Production in Aerobic Endospore-Forming Bacteria Isolated from Brazilian Soils.

Felipe de Araujo Mesquita, Waldeyr Mendes Cordeiro da Silva, Taina Raiol, Marcelo de Macedo Brigido, Nalvo Franco de Almeida, Bruna Fuga, Danilo de Andrande Cavalcante, Marlene Teixeira De-Souza

Abstract read
In one paragraph

Article in Microorganisms, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Comparative Genomic Analysis ofMicroorganisms · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Felipe de Araujo MesquitaDepartment of Cellular Biology, Institute of Biological Sciences, University of Brasilia (UnB), Brasilia 70910-900, Brazil.ORCID 0000-0003-0412-7618
Waldeyr Mendes Cordeiro da SilvaInstituto Federal de Goiás, Formosa 73813-816, GO, Brazil.ORCID 0000-0002-8660-6331
Taina RaiolFiocruz Brasília, Oswaldo Cruz Foundation, Brasilia 70904-130, Brazil.
Marcelo de Macedo BrigidoDepartment of Cellular Biology, Institute of Biological Sciences, University of Brasilia (UnB), Brasilia 70910-900, Brazil.ORCID 0000-0002-7136-7059
Nalvo Franco de AlmeidaFaculdade de Computação, Universidade Federal de Mato Grosso do Sul, Campo Grande 79070-900, MS, Brazil.ORCID 0000-0001-5615-1746
Bruna FugaDepartment of Cellular Biology, Institute of Biological Sciences, University of Brasilia (UnB), Brasilia 70910-900, Brazil.ORCID 0000-0002-4729-5139
Danilo de Andrande CavalcanteDepartment of Cellular Biology, Institute of Biological Sciences, University of Brasilia (UnB), Brasilia 70910-900, Brazil.
Marlene Teixeira De-SouzaDepartment of Cellular Biology, Institute of Biological Sciences, University of Brasilia (UnB), Brasilia 70910-900, Brazil.ORCID 0000-0003-1538-2657

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Terpenes are the largest category of specialised metabolites. Aerobic endospore-forming bacteria (AEFB), a diverse group of microorganisms, can thrive in various habitats and produce specialised metabolites, including terpenes. This study investigates the potential for terpene biosynthesis in 10 AEFB strain whole-genome sequences by performing a bioinformatics analyses to identify genes associated with these isoprene biosynthesis pathways. Specifically, we focused on the sequences coding for enzymes in the methylerythritol-phosphate (MEP) pathway and the polyprenyl synthase family, which play crucial roles in synthesising terpene precursors together with terpene synthases. A comparative analysis revealed the unique genetic architecture of these biosynthetic gene clusters (BGCs). Our results indicated that some strains possessed the complete genetic machinery required to produce terpenes such as squalene, hopanoids, and carotenoids. We also reconstructed phylogenetic trees based on the amino acid sequences of terpene synthases, which aligned with the phylogenetic relationships inferred from the whole-genome sequences, suggesting that the production of terpenes is an ancestor property in AEFB. Our findings highlight the importance of genome mining as a powerful tool for discovering new biological activities. Furthermore, this research lays the groundwork for future investigations to enhance our understanding of terpene biosynthesis in AEFB and the potential applications of these Brazilian environmental strains.

Indexed as

Bacillus and related generabiosynthetic gene cluster (BGC)conserved signature indels for different cladeshopanoidslycopenemethylerythritol-phosphate (MEP) pathwaysecondary or specialised metabolitessqualenethe antiSMASH software

Identifiers

PMID41304214
PMCPMC12654598

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.