Evidence map›Paper›PMID 41303528›Full record

ArticleInternational journal of molecular sciences2025

Biomarker Identification via Spatial Transcriptomics Profiling of Colorectal Cancer and Colorectal Cancer with Liver Metastasis Stem Cells.

Minho Lee, Seoin Han, Hak Chun Kim, Yujun Jung, Jeong-An Gim, Chang-Jin Kim, Dongjun Jeong

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Minho LeeDepartment of Pathology, College of Medicine, Soonchunhyang University, 31 Soonchunhyang 6 gil, Dongnam-gu, Cheonan 31151, Chungcheongnam-do, Republic of Korea.
Seoin HanDepartment of Pathology, College of Medicine, Soonchunhyang University, 31 Soonchunhyang 6 gil, Dongnam-gu, Cheonan 31151, Chungcheongnam-do, Republic of Korea.
Hak Chun KimSoonchunhyang Medical Science Research Institute, College of Medicine, Soonchunhyang University, 25 Bongjeong-ro, Dongnam-gu, Cheonan 31151, Chungcheongnam-do, Republic of Korea.
Yujun JungSoonchunhyang Medical Science Research Institute, College of Medicine, Soonchunhyang University, 25 Bongjeong-ro, Dongnam-gu, Cheonan 31151, Chungcheongnam-do, Republic of Korea.
Jeong-An GimDepartment of Medical Science, Soonchunhyang University, 22 Suncheonhyang-ro, Asan-si 31538, Chungcheongnam-do, Republic of Korea.
Chang-Jin KimChangwon Hanmaeum Hospital, Uichang-gu, Changwon-si 51139, Gyeongsangnam-do, Republic of Korea.
Dongjun JeongDepartment of Pathology, College of Medicine, Soonchunhyang University, 31 Soonchunhyang 6 gil, Dongnam-gu, Cheonan 31151, Chungcheongnam-do, Republic of Korea.ORCID 0000-0001-8180-5668

Funding

Ministry of Food and Drug Safety 24202MFDS738The Basic Science Research Program of the National Research Foundation of Korea is funded by the Ministry of Education NRF433 2021R1A6A1A03039503the Ministry of Education of the Republic of Korea and National Research Foundation of Korea NRF-2022R1A2C2010445the Regional Innovation Mega Project Program through the Korea Innovation Foundation, funded by the Ministry of Science and ICT 2023-DD-UP-0007
6 · The paper itself

Abstract

Colorectal cancer (CRC) demonstrates favorable clinical outcomes when diagnosed at an early stage; however, the prognosis declines substantially following recurrence or distant metastasis. Increasing evidence indicates that cancer stem cells (CSCs) are pivotal contributors to tumor recurrence, metastatic dissemination, and therapeutic resistance. The present study aimed to identify CSC-associated biomarkers through spatial transcriptomic profiling of normal colonic mucosa, primary CRC, and liver metastatic tissues, and to evaluate their functional relevance in CRC progression. Spatial transcriptomic analysis revealed that CCN2 was preferentially enriched within CSC clusters of primary CRC tissues, whereas APOC2 was predominantly upregulated in liver-metastatic CSCs. Functional validation of CCN2 was performed by establishing CCN2-knockout HCT116 cell lines using the CRISPR-Cas9 system. Loss of CCN2 expression markedly attenuated cell proliferation, migration, invasion, and oxaliplatin resistance compared with control cells. Furthermore, immunohistochemical analysis of tissue microarrays demonstrated a significant positive correlation between CCN2 expression and CSC markers SOX2 and Nestin. Collectively, these findings suggest that CCN2 functions as a central regulator of stemness and malignant potential in CRC and may represent a promising therapeutic target to prevent recurrence and metastasis. Additional mechanistic studies are warranted to further elucidate the molecular pathways of CCN2 and to validate the role of APOC2 in liver-metastatic CRC stem cells.

Indexed as

Biomarkers, TumorColorectal NeoplasmsConnective Tissue Growth FactorLiver NeoplasmsNeoplastic Stem CellsTranscriptomeCell Line, TumorCell MovementCell ProliferationGene Expression ProfilingGene Expression Regulation, NeoplasticHCT116 CellsHumansBiomarkers, TumorCCN2 protein, humanConnective Tissue Growth Factorbiomarkerscancer stem cellcolorectal cancerdigital spatial profilergene expressionmetastasis

Identifiers

PMID41303528
PMCPMC12652122

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.