Evidence map›Paper›PMID 41303435›Full record

ArticleInternational journal of molecular sciences2025

Transcriptomics Data Mining to Identify Novel Regulatory Genes of Iron Uptake in Drought-Stressed Wheat.

Mohamed Najib Saidi, Omeima Rebai, Fadhila Hachani, Gianpiero Vigani, Stefania Astolfi

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Mohamed Najib SaidiBiotechnology and Plant Improvement Laboratory, Centre of Biotechnology of Sfax, P.O. Box 1177, Road Sidi Mansour 6 km, Sfax 3018, Tunisia.ORCID 0000-0002-7692-4643
Omeima RebaiBiotechnology and Plant Improvement Laboratory, Centre of Biotechnology of Sfax, P.O. Box 1177, Road Sidi Mansour 6 km, Sfax 3018, Tunisia.
Fadhila HachaniBiotechnology and Plant Improvement Laboratory, Centre of Biotechnology of Sfax, P.O. Box 1177, Road Sidi Mansour 6 km, Sfax 3018, Tunisia.
Gianpiero ViganiDepartment of Life Sciences and Systems Biology, University of Torino, 10124 Torino, Italy.
Stefania AstolfiDepartment of Agricultural and Forest Sciences (DAFNE), University of Tuscia, 01100 Viterbo, Italy.ORCID 0000-0002-1450-8783

Funding

Tunisian Ministry of Higher Education and Scientific Research-Tunisia EXPLOWHEAT CUP J89C19000140005
6 · The paper itself

Abstract

Understanding the molecular crosstalk between drought and iron (Fe) homeostasis is crucial for developing drought-tolerant wheat cultivars with enhanced nutrient quality. In this study, transcriptomic data mining identified 23,271 and 5933 differentially expressed genes (DEGs) under drought and Fe deficiency, respectively, with 2479 DEGs in response to both stresses. Notably, this overlapping set included significant numbers of genes encoding transcription factors (TFs) (149 genes), Fe homeostasis components (274 genes), and those involved in phytohormones pathways (245 genes), particularly the abscisic acid (ABA) pathway. Gene Ontology (GO) analysis revealed specific and commonly affected biological processes, such as response to abiotic stimulus and heme binding. Furthermore, co-expression network analysis revealed modules highly enriched with genes involved in transcriptional regulation and Fe uptake, enabling the identification of key hub regulatory genes, belonging to the MYB, NAC, BHLH, and AP2/ERF families, involved in the shared stress response. Finaly, the expression of a set of candidate TF-encoding genes was validated using qRT-PCR in durum wheat under drought and Fe starvation, providing a detailed overview of the possible shared regulatory mechanisms linking drought and Fe deficiency responses.

Indexed as

Data MiningDroughtsIronStress, PhysiologicalTranscriptomeTriticumGene Expression ProfilingGene Expression Regulation, PlantGene OntologyGene Regulatory NetworksPlant ProteinsTranscription FactorsIronPlant ProteinsTranscription Factorsco-expressiondroughtdurum wheatFe deficiencytranscription factor

Identifiers

PMID41303435
PMCPMC12652351

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.