Evidence map›Paper›PMID 41301506›Full record

ArticleBiomolecules2025

Ecological History Shapes Transcriptome Variation in Quiescent

Agnieszka Marek, Katarzyna Tomala, Dominika Wloch-Salamon

Abstract read
In one paragraph

Article in Biomolecules, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Agnieszka MarekInstitute of Botany, Faculty of Biology, Jagiellonian University, 30-387 Kraków, Poland.ORCID 0000-0003-3161-6038
Katarzyna TomalaInstitute of Environmental Sciences, Faculty of Biology, Jagiellonian University, 30-387 Kraków, Poland.
Dominika Wloch-SalamonInstitute of Environmental Sciences, Faculty of Biology, Jagiellonian University, 30-387 Kraków, Poland.ORCID 0000-0002-0040-1838

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Quiescence is a pivotal state for all living organisms and cells. However, recent research indicates a lack of uniformity among quiescent cells. That is, even if the primary feature of quiescence-the ability to restart divisions-is maintained, quiescent cells within populations exhibit variation in their cellular architecture and characteristics. While it is known that the process of entry into quiescence is influenced by a combination of nutrient starvation and temporal factors, the underlying mechanisms remain to be fully elucidated. In this study, we compare the transcriptomes of known homogenous fractions of dense quiescent yeast isolated from populations of different ecological histories. These populations have undergone experimental enrichment of certain types of quiescent cells during cycles of growth and starvation for 300 generations. Transcriptome analysis revealed discrepancies in terms of characteristics associated mainly with energy turnover processes, biosynthesis, and cell wall maintenance. The results of this study suggest that quiescent cells possess the capacity to adapt their transcriptome activity in accordance with their evolutionary history.

Indexed as

Saccharomyces cerevisiaeTranscriptomeCell WallGene Expression ProfilingGene Expression Regulation, FungalSaccharomyces cerevisiae ProteinsSaccharomyces cerevisiae Proteinslife historyquiescent cellsRNA-seq

Identifiers

PMID41301506
PMCPMC12650442

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.