Evidence map›Paper›PMID 41299597›Full record

ArticleBMC medical informatics and decision making2025

A prompt framework for enhancing LLM-based explainability of medical machine learning models: an intensive care unit application.

Sujung Lee, Won Ik Cho, Youngrong Lee, Duck Ju Kim, Kyeng Hyun Nam, Sangmin Lee, Jungyo Suh, Taehoon Ko

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Article in BMC medical informatics and decision making, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

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1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

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3 · Its place in the literature

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1 citing paper in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

8 authors.

Sujung LeeDepartment of Medical Informatics, College of Medicine, The Catholic University of Korea, 222 Banpo-daero, Seocho-gu, Seoul, 06591, Republic of Korea.
Won Ik ChoDepartment of Electrical and Computer Engineering, Seoul National University, Seoul, Republic of Korea.
Youngrong LeeDepartment of Medical Informatics, College of Medicine, The Catholic University of Korea, 222 Banpo-daero, Seocho-gu, Seoul, 06591, Republic of Korea.
Duck Ju KimMedical AI LAB, MODULABS, Seoul, Republic of Korea.
Kyeng Hyun NamDepartment of Urology, Asan Medical Center, University of Ulsan College of Medicine, 88, Olympic-ro 43-gil, Songpa-gu, Seoul, 05505, Republic of Korea.
Sangmin LeeDepartment of Urology, Asan Medical Center, University of Ulsan College of Medicine, 88, Olympic-ro 43-gil, Songpa-gu, Seoul, 05505, Republic of Korea.
Jungyo Suh *Medical AI LAB, MODULABS, Seoul, Republic of Korea. uro_jun@amc.seoul.kr.
Taehoon Ko *Department of Medical Informatics, College of Medicine, The Catholic University of Korea, 222 Banpo-daero, Seocho-gu, Seoul, 06591, Republic of Korea. thko@catholic.ac.kr.

Funding

Korea Health Industry Development Institute HI21C1074
6 · The paper itself

Abstract

backgroundExplainable AI (XAI) techniques like SHAP provide valuable insights into machine learning model predictions by quantifying feature contributions. However, interpreting these quantitative outputs remains unintuitive for many clinicians, hindering their practical adoption in clinical decision-making. This exploratory feasibility study aims to propose and evaluate a prompting framework designed to guide large language models (LLMs) in generating consistent, clinically relevant explanations from SHAP values.

methodsWe developed a structured zero-shot prompting framework incorporating variable definitions, safety principles, and a three-step reasoning process; (1) key risk factors, (2) prediction-outcome reconciliation, (3) clinical recommendations. This framework guided GPT-4 to explain SHAP-based predictions from an ICU extubation failure model (trained on MIMIC-III data). The framework’s performance was assessed using quantitative consistency metrics (entropy, accuracy) and a qualitative clinician survey (n = 7).

resultsThe LLM achieved a fidelity of 0.783 and entropy of 0.226, indicating consistent structured reasoning. On a 5-point Likert scale, clinicians rated the LLM-generated explanations as helpful (mean: 3.94 ± 0.48) and safe (4.21 ± 0.68). However, critical care specialists assigned lower scores than non-critical care physicians (helpfulness: 3.48 vs. 4.29; safety: 3.45 vs. 4.79), suggesting domain-specific caution in perceived utility.

conclusionsA structured prompting framework shows feasibility in leveraging LLMs to enhance the clinical interpretability of SHAP explanations. This methodological approach warrants further investigation and refinement for broader clinical application.

Indexed as

Intensive Care UnitsLarge Language ModelsMachine LearningFeasibility StudiesHumansPredictive Learning ModelsClinical decision supportExplainable AIExtubation failureLarge language modelsMIMIC-IIISHAP

Identifiers

PMID41299597
PMCPMC12659558

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.