Evidence map›Paper›PMID 41298811›Full record

ArticleCommunications biology2025

Diel study reveals increased nighttime bacterial activity and its connection to organic compounds in the ocean.

Shuting Liu, Krista Longnecker, Kevin Vergin, Luis M Bolaños, Stephen Giovannoni, Keri Opalk, Elisa Halewood, Melissa C Kido Soule, Gretchen J Swarr, Rachel Parsons and 9 more

Abstract read
In one paragraph

Article in Communications biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Shuting LiuDepartment of Environmental & Sustainability Sciences, Kean University, Union, NJ, USA. liushut@kean.edu.ORCID http://orcid.org/0000-0002-3537-1587
Krista LongneckerDepartment of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA, USA.
Kevin VerginMicrobial DNA Analytics, Phoenix, OR, USA.ORCID http://orcid.org/0000-0002-8972-2813
Luis M BolañosSchool of Biosciences, University of Exeter, Exeter, UK.ORCID http://orcid.org/0000-0002-0832-016X
Stephen GiovannoniDepartment of Microbiology, Oregon State University, Corvallis, OR, USA.ORCID http://orcid.org/0000-0002-2431-4296
Keri OpalkMarine Science Institute/Department of Ecology, Evolution and Marine Biology, University of California Santa Barbara, Santa Barbara, CA, USA.ORCID http://orcid.org/0000-0001-7068-0601
Elisa HalewoodMarine Science Institute/Department of Ecology, Evolution and Marine Biology, University of California Santa Barbara, Santa Barbara, CA, USA.
Melissa C Kido SouleDepartment of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA, USA.
Gretchen J SwarrDepartment of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA, USA.
Rachel ParsonsBermuda Institute of Ocean Sciences, Global Futures Laboratory, Arizona State University, St George's, Bermuda.
Amy E MaasBermuda Institute of Ocean Sciences, Global Futures Laboratory, Arizona State University, St George's, Bermuda.
Hannah GossnerBermuda Institute of Ocean Sciences, Global Futures Laboratory, Arizona State University, St George's, Bermuda.
Leocadio Blanco-BercialBermuda Institute of Ocean Sciences, Global Futures Laboratory, Arizona State University, St George's, Bermuda.ORCID http://orcid.org/0000-0003-0658-7183
Fabian WittmersDepartment of Microbiology, Oregon State University, Corvallis, OR, USA.
Alexandra Z WordenJosephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, MA, USA.ORCID http://orcid.org/0000-0002-9888-9324
Elizabeth B KujawinskiDepartment of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA, USA.ORCID http://orcid.org/0000-0001-8261-971X
Ruth CurryBermuda Institute of Ocean Sciences, Global Futures Laboratory, Arizona State University, St George's, Bermuda.
Rod JohnsonBermuda Institute of Ocean Sciences, Global Futures Laboratory, Arizona State University, St George's, Bermuda.
Craig A CarlsonMarine Science Institute/Department of Ecology, Evolution and Marine Biology, University of California Santa Barbara, Santa Barbara, CA, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The linkages between dissolved organic matter (DOM) dynamics and bacterial activity (BAct) are key to regulating carbon fluxes in marine food webs. While transcriptional activities have shown diel patterns, the connections between BAct and DOM on the diel timescale remain unclear. This study explored how bacterioplankton transform DOM over diel cycles in the euphotic and upper twilight zones (to 300 m) of the North Atlantic subtropical gyre. BAct peaked at night in the euphotic zone, following daytime maxima in chlorophyll fluorescence, suggesting a delayed bacterial response to photosynthetic activity. Our data show nighttime BAct exceeded daytime rates 34-47% under dark incubations. Total dissolved amino acids (TDAA) concentrations were lowest at night in the upper twilight waters, indicating nighttime DOM consumption by bacterioplankton. Additionally, we observed that diel vertical migrators could contribute to the oscillation of labile DOM, such as TDAA, although their irregularity requires more detailed studies. BAct shifted DOM composition from fresher to more degraded forms, likely driven by bacterioplankton lineages such as SAR11, Rhodospirillaceae, and SAR202. Our findings show that daytime photosynthesis drives DOM production, while enhanced nighttime heterotrophic BAct facilitates its consumption and transformation, highlighting notable fluctuations in microbial processes and carbon cycling on a diel scale.

Indexed as

BacteriaOrganic ChemicalsSeawaterOceans and SeasPhotosynthesisOrganic Chemicals

Identifiers

PMID41298811
PMCPMC12658054

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.