Evidence map›Paper›PMID 41298797›Full record

ArticleCommunications biology2025

Aberrant strand transfer events across multiple stages of reverse transcription shape the heterogeneous landscape of the HIV-1 reservoir.

Jarryt Hardy, Virginie Mortier, Yiannis De Meersman, Delfien Staelens, Els Demecheleer, Marlies Schauvliege, Ciel Vermeersch, Elizaveta Padalko, Chris Verhofstede

Abstract read
In one paragraph

Article in Communications biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Mechanism of HIV-1 Capsid Rupture and Uncoating by Reverse Transcription.bioRxiv : the preprint server for biology · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Jarryt HardyAIDS Reference Laboratory, Department of Diagnostic Sciences, Ghent University, Ghent, Belgium. jarryt.hardy@ugent.be.ORCID http://orcid.org/0000-0002-5343-5732
Virginie MortierAIDS Reference Laboratory, Department of Diagnostic Sciences, Ghent University, Ghent, Belgium.
Yiannis De MeersmanAIDS Reference Laboratory, Department of Diagnostic Sciences, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0009-0007-5704-6690
Delfien StaelensAIDS Reference Laboratory, Department of Diagnostic Sciences, Ghent University, Ghent, Belgium.
Els DemecheleerAIDS Reference Laboratory, Department of Diagnostic Sciences, Ghent University, Ghent, Belgium.
Marlies SchauvliegeAIDS Reference Laboratory, Department of Diagnostic Sciences, Ghent University, Ghent, Belgium.
Ciel VermeerschAIDS Reference Laboratory, Department of Diagnostic Sciences, Ghent University, Ghent, Belgium.
Elizaveta PadalkoAIDS Reference Laboratory, Department of Diagnostic Sciences, Ghent University, Ghent, Belgium.
Chris VerhofstedeAIDS Reference Laboratory, Department of Diagnostic Sciences, Ghent University, Ghent, Belgium.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Curative interventions for HIV-1 seek to reduce the size of the replication-competent viral reservoir. A comprehensive understanding of the composition of defective proviral sequences is essential for refining the methods used to characterize and measure this replication-competent viral reservoir. An in-depth analysis of proviral sequences with a single internal deletion was performed to better understand the mechanisms behind their origin. An in-house full-length individual proviral sequencing technique was adopted for HIV-1 sequencing. This sequence dataset was further supplemented with sequences from two published studies, adding up to 395 proviral sequences. Based on the deletion junction profile of each individual provirus, six hypothetical mechanisms of aberrant strand transfer during reverse transcription were modelled. Our findings show that proviral sequences with deletions do not exclusively result from erroneous strand transfer events during minus-strand synthesis but emerge through distinct mechanisms throughout the reverse transcription process.

Indexed as

HIV-1HIV InfectionsProvirusesReverse TranscriptionHumansRNA, ViralVirus ReplicationRNA, Viral

Identifiers

PMID41298797
PMCPMC12657518

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.