Evidence map›Paper›PMID 41298443›Full record

ArticleNature communications2025

Osmotic pressure regulates DNA labelling and transcription with dCas9-SunTag system in live cells.

Tanlin Wei, Xiaofeng Yang, Chao Jiang, Kaitong Liao, Huiying Ye, Hong-Yu Luo, Yu-Ru Liu, Peng-Ye Wang, Fanlong Meng, Shuo-Xing Dou and 2 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Tanlin Wei *Beijing National Laboratory for Condensed Matter Physics and Laboratory of Soft Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing, China.
Xiaofeng Yang *Cancer Research Institute, School of Basic Medical Sciences, Dermatology Hospital, State Key Laboratory of Organ Failure Research, National Clinical Research Center of Kidney Disease, Key Laboratory of Organ Failure Research (Ministry of Education), Southern Medical University, Guangzhou, China.
Chao JiangBeijing National Laboratory for Condensed Matter Physics and Laboratory of Soft Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing, China.
Kaitong LiaoCancer Research Institute, School of Basic Medical Sciences, Dermatology Hospital, State Key Laboratory of Organ Failure Research, National Clinical Research Center of Kidney Disease, Key Laboratory of Organ Failure Research (Ministry of Education), Southern Medical University, Guangzhou, China.
Huiying YeCancer Research Institute, School of Basic Medical Sciences, Dermatology Hospital, State Key Laboratory of Organ Failure Research, National Clinical Research Center of Kidney Disease, Key Laboratory of Organ Failure Research (Ministry of Education), Southern Medical University, Guangzhou, China.
Hong-Yu LuoBeijing National Laboratory for Condensed Matter Physics and Laboratory of Soft Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing, China.
Yu-Ru LiuBeijing National Laboratory for Condensed Matter Physics and Laboratory of Soft Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing, China.
Peng-Ye WangTsientang Institute for Advanced Study, Hangzhou, Zhejiang, China.ORCID http://orcid.org/0000-0002-9765-0610
Fanlong MengSchool of Physical Sciences, University of Chinese Academy of Sciences, Beijing, China.ORCID http://orcid.org/0000-0002-8322-4696
Shuo-Xing DouBeijing National Laboratory for Condensed Matter Physics and Laboratory of Soft Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing, China. sxdou@iphy.ac.cn.ORCID http://orcid.org/0000-0002-7201-2081
Zhili RongCancer Research Institute, School of Basic Medical Sciences, Dermatology Hospital, State Key Laboratory of Organ Failure Research, National Clinical Research Center of Kidney Disease, Key Laboratory of Organ Failure Research (Ministry of Education), Southern Medical University, Guangzhou, China. rongzhili@smu.edu.cn.ORCID http://orcid.org/0000-0002-1699-7074
Hui LiSchool of Systems Science and Institute of Nonequilibrium Systems, Beijing Normal University, Beijing, China. huili@bnu.edu.cn.ORCID http://orcid.org/0000-0003-0551-9912

Funding

National Natural Science Foundation of China (National Science Foundation of China) 12122402, 12074043
6 · The paper itself

Abstract

Extracellular osmotic pressure is a key modulator of intracellular biophysical properties and cellular functions. However, its impact on the cell nucleus remains elusive, largely due to the challenges in real-time measurement of local environmental properties and reaction kinetics at specific loci within the nucleus. Here, we employ the dCas9-SunTag system to investigate the biophysical response at target DNA loci to osmotic pressure alterations. We reveal that variations in extracellular osmotic pressure modulate the efficiency of dCas9-SunTag-mediated fluorescent labelling rapidly and reversibly, with hypoosmotic condition increasing and hyperosmotic condition decreasing the number and fluorescence intensity of foci for telomeres and genes. Strikingly, osmotic pressure also regulates gene transcription with the dCas9-SunTag system, mirroring its effects on fluorescent labelling, as evidenced by changes in mRNA burst frequency. The underlying mechanism is that osmotic pressure shifts the binding-unbinding equilibrium of specific proteins to dCas9-SunTag complex by altering intranuclear crowding. These findings not only highlight the role of mechanical cues in modulating DNA-related processes within the nucleus, but also establish the dCas9-SunTag system as a sensitive probe for intranuclear crowding in response to extracellular cues, notably osmotic pressure.

Indexed as

CRISPR-Associated Protein 9DNAOsmotic PressureTranscription, GeneticCell NucleusCRISPR-Cas SystemsHeLa CellsHumansTelomereCRISPR-Associated Protein 9DNA

Identifiers

PMID41298443
PMCPMC12823613

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.