Evidence map›Paper›PMID 41297926›Full record

ArticleMicrobes and environments2025

Analysis of Soil Microbial Features in a Rice Paddy Field with High Methane Emissions.

Yoriko Sakai, Ichiro Uezono, Makoto Shibuya, Noriko Oura, Shigeto Sudo

Abstract read
In one paragraph

Article in Microbes and environments, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yoriko SakaiInstitute for Agro-Environmental Sciences, National Agriculture and Food Research Organization (NARO).
Ichiro UezonoKagoshima Prefectural Institute of Agricultural Development.
Makoto ShibuyaAkita Agricultural Experiment Station.
Noriko OuraInstitute for Agro-Environmental Sciences, National Agriculture and Food Research Organization (NARO).
Shigeto SudoInstitute for Agro-Environmental Sciences, National Agriculture and Food Research Organization (NARO).

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The soil microbial communities in two Japanese paddy fields were compared: site PA, which emits methane at the domestic average level, and site PX, which emits more than five times that amount. The transcription levels of methyl-coenzyme M reductase (mcrA) significantly increased during peak methane emissions at site PX, but not at site PA. The anaerobic methanotroph "Candidatus Methanoperedens" exhibited low activity and abundance exclusively at site PX. The genus Methanoregula was the most active methanogen at both sites; however, the dominant methanotrophs differed, with Methylocystis dominating at site PA and Methylomonas at site PX.

Indexed as

BacteriaMethaneOryzaSoil MicrobiologyJapanMicrobiotaOxidoreductasesPhylogenyRNA, Ribosomal, 16SSoilMethanemethyl coenzyme M reductaseOxidoreductasesRNA, Ribosomal, 16SSoil“Candidatus Methanoperedens”mcrAmethanotrophrice paddy field

Identifiers

PMID41297926
PMCPMC12727204

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.