Evidence map›Paper›PMID 41297801›Full record

ArticleNucleic acids research2025

The chromatin regulator HELLS mediates SSB repair and responses to DNA alkylation damage.

Joyous T Joseph, Christine M Wright, Estanislao Peixoto, Etsuko Shibata, Asad Khan, Yong Li, Jason S Romero Neidigk, Bo-Ruei Chen, Saba Tufail, Aaiyas Abdulhamid Mujawar and 11 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Molecular basis of nick ligation in the nucleosome by DNA Ligase IIIα.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Oncology research · 2026
    Article
  5. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors.

Joyous T JosephDepartment of Genetics, University of Alabama, Birmingham, AL 35233, United States.
Christine M WrightDepartment of Genetics, University of Alabama, Birmingham, AL 35233, United States.
Estanislao PeixotoThe Hormel Institute, University of Minnesota, Austin, MN 55912, United States.
Etsuko ShibataDepartment of Genetics, University of Alabama, Birmingham, AL 35233, United States.
Asad KhanThe Hormel Institute, University of Minnesota, Austin, MN 55912, United States.
Yong LiDepartment of Physiology and Biomedical Engineering, Mayo Clinic, Rochester, MN 55905, United States.
Jason S Romero NeidigkDepartment of Genetics, University of Alabama, Birmingham, AL 35233, United States.
Bo-Ruei ChenO'Neal Comprehensive Cancer Center, University of Alabama, Birmingham, AL 35233, United States.
Saba TufailDepartment of Genetics, University of Alabama, Birmingham, AL 35233, United States.
Aaiyas Abdulhamid MujawarDepartment of Genetics, University of Alabama, Birmingham, AL 35233, United States.
Olivia DeckerDepartment of Genetics, University of Alabama, Birmingham, AL 35233, United States.
Krishna Reethika KadaliDepartment of Genetics, University of Alabama, Birmingham, AL 35233, United States.
Azait ImtiazDepartment of Genetics, University of Alabama, Birmingham, AL 35233, United States.
Brianna A JonesDepartment of Genetics, University of Alabama, Birmingham, AL 35233, United States.
Yanfeng ZhangDepartment of Genetics, University of Alabama, Birmingham, AL 35233, United States.
Sergio A GradiloneThe Hormel Institute, University of Minnesota, Austin, MN 55912, United States.
Zachary A LewisDepartment of Microbiology, University of Georgia, Athens, GA 30602, United States.
Rafael Contreras-GalindoDepartment of Genetics, University of Alabama, Birmingham, AL 35233, United States.
Arko SenDepartment of Genetics, University of Alabama, Birmingham, AL 35233, United States.
Anindya DuttaDepartment of Genetics, University of Alabama, Birmingham, AL 35233, United States.ORCID 0000-0002-3559-2574
Wioletta CzajaDepartment of Genetics, University of Alabama, Birmingham, AL 35233, United States.ORCID 0000-0002-2368-1131

Funding

XRAY CRYSTALLOGRAPHYP30CA013148 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Omer Jamy · 1985 to 2026
$165.9M
The role of MCM8-9 in genomic instability of cancersR01CA060499 · NCI · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI Anindya Dutta · 1994 to 2026
$8.6M
Primary cilia loss in bile duct cells- the interplay with the autophagy machineryR01DK132781 · NIDDK · UNIVERSITY OF MINNESOTA · PI Sergio A Gradilone · 2023 to 2026
$2.1M
Role of HELLS chromatin remodeler in genome maintenanceR01GM143428 · NIGMS · UNIVERSITY OF MINNESOTA · PI CZAJA, WIOLETTA · 2021 to 2024
$1.5M
Centromeres and Ovarian CancerR21CA259630 · NCI · UNIVERSITY OF MINNESOTA · PI CONTRERAS, RAFAEL ALEJANDRO · 2022 to 2022
$409k
National Institute of Health R01CA060499National Institute of Health R01DK132781National Institute of Health R01GM143428National Institute of Health R21CA259630National Scleroderma FoundationNCI NIH HHS P30 CA013148NCI NIH HHS R01 CA060499NCI NIH HHS R21 CA259630NIDDK NIH HHS R01 DK132781NIGMS NIH HHS R01 GM143428
6 · The paper itself

Abstract

The SNF2 family chromatin remodeler HELLS has emerged as an important regulator of cell proliferation, genome stability, and several cancer pathways. Significant upregulation of HELLS has been reported in 33 human cancer types. While HELLS has been implicated in DNA damage response, its function in DNA repair is poorly understood. Here, we report a new regulatory link between HELLS and single-strand break (SSB) repair in cellular responses to DNA alkylation damage. We found that loss of HELLS impairs SSB repair and selectively sensitizes cells to DNA alkylating agents and PARP inhibitors (PARPi). Our data reveal non-epistatic interactions between HELLS and PARP1 and suggest that HELLS functionally compensates for PARP1 deficiency in promoting cell survival in response to DNA alkylation damage. Furthermore, we found that HELLS is co-expressed with PARP1 in cancer cells, and its loss is synthetic lethal with homologous recombination deficiency (HRD). This work unveils new functions of HELLS in modulating SSB repair and responses to clinically relevant DNA alkylation damage, thus offering new insights into the potential therapeutic value of targeting HELLS in cancer.

Indexed as

Alkylating AgentsChromatinChromatin Assembly and DisassemblyDNADNA Breaks, Single-StrandedDNA HelicasesDNA RepairNeoplasmsAlkylationCell Line, TumorCell ProliferationHumansPoly (ADP-Ribose) Polymerase-1Alkylating AgentsChromatinDNADNA HelicasesHELLS protein, humanPARP1 protein, humanPoly (ADP-Ribose) Polymerase-1

Identifiers

PMID41297801
PMCPMC12651568

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.