Evidence map›Paper›PMID 41296700›Full record

ArticlePloS one2025

What is a "Good" figure: Scoring of biomedical data visualization.

Hector Torres, Efe Ozturk, Zhou Fang, Nicholas Zhang, Shuangyi Cai, Neel Sarkar, Ahmet F Coskun

Abstract read
In one paragraph

Article in PloS one, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Hector TorresWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, Georgia, United States of America.
Efe OzturkWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, Georgia, United States of America.
Zhou FangInterdisciplinary Bioengineering Graduate Program, Georgia Institute of Technology, Atlanta, Georgia, United States of America.
Nicholas ZhangWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, Georgia, United States of America.
Shuangyi CaiWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, Georgia, United States of America.
Neel SarkarWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, Georgia, United States of America.
Ahmet F CoskunWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, Georgia, United States of America.ORCID https://orcid.org/0000-0002-5797-1524

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Biomedical data visualization is critical for interpreting complex datasets, yet the clarity and quality of visualizations vary widely across tools and applications. This study introduces a comprehensive framework for evaluating biomedical figures and benchmarking visualization platforms. We developed Metrics for Evaluation and Discretization of Biomedical Visuals using an Iterative Scoring algorithm (M.E.D.V.I.S.), a quantification system that systematically assesses figure quality based on four criteria: Complexity, color usage, whitespace, and the number of distinct visualizations. The algorithm integrates dimensionality reduction, clustering, and thresholding to classify figures and generate tailored feedback for improvement. In parallel, we conducted a comparative analysis of 26 widely used visualization tools, evaluating each based on ease of use, customizability, financial cost, and required background knowledge. To demonstrate real-world applicability, we present case studies on figure evaluation in published research and introduce SpatioView, an interactive, browser-based platform for exploring spatial omics data. Collectively, our findings highlight the need for standardized evaluation methods and provide accessible solutions for improving figure design in biomedical research, education, and industry.

Indexed as

Biomedical ResearchData VisualizationAlgorithmsHumansSoftware

Identifiers

PMID41296700
PMCPMC12654910

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.