Evidence map›Paper›PMID 41296561›Full record

ArticleCell reports2025

Menin-MLL1 complex cooperates with NF-Y to promote hepatocellular carcinoma survival.

Margarita Dzama-Karels, Mallory Sokolowski, Peyton Kuhlers, Jacqueline A Brinkman, John P Morris, Jesse R Raab

Abstract read
In one paragraph

Article in Cell reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Margarita Dzama-KarelsDepartment of Genetics, the University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.
Mallory SokolowskiDepartment of Genetics, the University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.
Peyton KuhlersDepartment of Genetics, the University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.
Jacqueline A BrinkmanDepartment of Genetics, the University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.
John P MorrisLineberger Comprehensive Cancer Center, the University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA; Department of Pharmacology, the University of North Carolina at Chapel Hill Medical School, Chapel Hill, NC 27599, USA.
Jesse R RaabDepartment of Genetics, the University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA; Lineberger Comprehensive Cancer Center, the University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA. Electronic address: jraab@med.unc.edu.

Funding

NRSA in GeneticsT32GM135128 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Daniel J McKay, JEFF J. SEKELSKY · 2020 to 2026
$5.1M
Mechanisms of SWI/SNF complex assembly and functionR35GM147286 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Jesse R. Raab · 2022 to 2026
$2.1M
NIGMS NIH HHS R35 GM147286NIGMS NIH HHS T32 GM135128
6 · The paper itself

Abstract

Chromatin regulators are frequently mutated or aberrantly expressed in hepatocellular carcinoma (HCC), suggesting that the dysregulation of chromatin is a key feature driving liver cancer. In this study, using an epigenome-focused CRISPR screen in two-dimensional (2D) and three-dimensional (3D) conditions, we find the subunits of the menin-MLL1 complex to be among the strongest candidates for HCC survival. Inhibition of the menin-MLL1 interaction leads to global changes in occupancy of the complex with concomitant decreases in H3 lysine 4 trimethylation (H3K4me3), accessibility, and gene expression. Newly opened chromatin sites not bound by menin-MLL1 are associated with the recruitment of the pioneer transcription factor complex NF-Y yet remain embedded in silent chromatin domains, suggesting that they are primed for expression. A CRISPR-Cas9 screen of chromatin regulators in the presence of menin inhibitor SNDX-5613 reveals a significantly increased cell death when combined with NFYB knockout. Together, these data show that menin-MLL1 is necessary for HCC cell survival and cooperates with NF-Y to regulate oncogenic gene transcription.

Indexed as

Carcinoma, HepatocellularCCAAT-Binding FactorHistone-Lysine N-MethyltransferaseLiver NeoplasmsMyeloid-Lymphoid Leukemia ProteinProto-Oncogene ProteinsCell Line, TumorCell SurvivalChromatinGene Expression Regulation, NeoplasticHistonesHumansCCAAT-Binding FactorChromatinHistone-Lysine N-MethyltransferaseHistonesKMT2A protein, humanMEN1 protein, humanMyeloid-Lymphoid Leukemia ProteinProto-Oncogene ProteinsCP: cancerCP: molecular biologyCRISPR-Cas9 screenHCCliver cancermenin inhibitionmenin-MLL1 complexNF-Y complex

Identifiers

PMID41296561
PMCPMC12829923

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.