Evidence map›Paper›PMID 41295300›Full record

ArticleMetabolites2025

Integrated Metagenomic and Metabolomic Analyses Reveal a Microbiota-Metabolite Axis Associated with Gallstone Pathogenesis.

He Bai, Kai Luo, Yuzhu Jin, Xu Sun, Xudong Zhang, Yuting Zhao, Yaqoob Muhammad, Anliang Huang, Peiyuan Yin, Guixin Zhang

Abstract read
In one paragraph

Article in Metabolites, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

He BaiDepartment of General Surgery, The Second Hospital of Dalian Medical University, Dalian 116000, China.
Kai LuoDepartment of General Surgery, The Second Hospital of Dalian Medical University, Dalian 116000, China.
Yuzhu JinDepartment of General Surgery, The Second Hospital of Dalian Medical University, Dalian 116000, China.
Xu SunDepartment of General Surgery, The Second Hospital of Dalian Medical University, Dalian 116000, China.ORCID 0009-0000-6489-7775
Xudong ZhangDepartment of General Surgery, The Second Hospital of Dalian Medical University, Dalian 116000, China.
Yuting ZhaoLaboratory of Integrative Medicine, The First Affiliated Hospital of Dalian Medical University, Dalian 116000, China.
Yaqoob MuhammadDepartment of General Surgery, The Second Hospital of Dalian Medical University, Dalian 116000, China.
Anliang HuangLaboratory of Integrative Medicine, The First Affiliated Hospital of Dalian Medical University, Dalian 116000, China.
Peiyuan YinLaboratory of Integrative Medicine, The First Affiliated Hospital of Dalian Medical University, Dalian 116000, China.ORCID 0000-0003-3639-3363
Guixin ZhangDepartment of General Surgery, The Second Hospital of Dalian Medical University, Dalian 116000, China.ORCID 0009-0007-5583-4271

Funding

National Natural Science Foundation of China 82174136
6 · The paper itself

Abstract

BACKGROUND/

objectivesGallstone disease is a prevalent digestive disorder worldwide, with incidence increasingly linked to obesity, insulin resistance, and dyslipidemia. Emerging evidence suggests that intestinal microbial communities and their bioactive compounds play a central role in pathogenesis. Here, we aimed to clarify whether diet-related microbial alterations and circulating metabolites contribute to gallstone formation.

methodsWe integrated dietary inflammatory index (DII) evaluation, genetic analyses of large-scale cohorts, and a cholesterol gallstone mouse model induced by a lithogenic diet (LD). Serum and fecal samples were subjected to metabolomic and metagenomic profiling, followed by multi-omics integration to identify links between microbial taxa, metabolites, and gallstone risk.

resultsHigher DII scores were associated with increased gallstone risk. Genetic evidence supported bile acid and amino acid metabolism as potential mediating pathways, with

conclusionsThis study provides evidence consistent with a contributory role of gut microbiota-metabolite dysregulation in gallstone pathogenesis. Specific taxa (

Indexed as

dietary inflammatory indexgallstone diseaseglycodeoxycholatemicrobiota–metabolite axisN-acetylarginine

Identifiers

PMID41295300
PMCPMC12654344

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.