Evidence map›Paper›PMID 41293057›Full record

ArticleFrontiers in cellular and infection microbiology2025

Exploring the liver microenvironment following successful therapy for HCV: gene expression profiling and residual T cell infiltration.

Daniel E Millian, Esteban Arroyave, Timothy G Wanninger, Santhoshi Krishnan, Daniel Bao, Jared R Zhang, Arvind Rao, Heidi Spratt, Monique R Ferguson, Vincent Chen and 3 more

Abstract read
In one paragraph

Article in Frontiers in cellular and infection microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

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0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Daniel E MillianDepartment of Pathology, University of Texas Medical Branch, Galveston, TX, United States.
Esteban ArroyaveDepartment of Pathology, University of Texas Medical Branch, Galveston, TX, United States.
Timothy G WanningerDepartment of Microbiology and Immunology, University of Texas Medical Branch, Galveston, TX, United States.
Santhoshi KrishnanDepartment of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, United States.
Daniel BaoJohn Sealy School of Medicine, University of Texas Medical Branch, Galveston, TX, United States.
Jared R ZhangJohn Sealy School of Medicine, University of Texas Medical Branch, Galveston, TX, United States.
Arvind RaoDepartment of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, United States.
Heidi SprattDepartment of Biostatistics and Data Science, University of Texas Medical Branch, Galveston, TX, United States.
Monique R FergusonDepartment of Internal Medicine, University of Texas Medical Branch, Galveston, TX, United States.
Vincent ChenDepartment of Internal Medicine - Gastroenterology, University of Michigan, Ann Arbor, MI, United States.
Kellen HenningDepartment of Microbiology and Immunology, University of Texas Medical Branch, Galveston, TX, United States.
Heather L StevensonDepartment of Pathology, University of Texas Medical Branch, Galveston, TX, United States.
Omar A SaldarriagaDepartment of Pathology, University of Texas Medical Branch, Galveston, TX, United States.

Funding

ANALYSIS OF INTRAHEPATIC MACROPHAGE PROFILES FOR PREDICTING RISK OF FIBROSIS DEVELOPMENT IN PATIENTS WITH DIFFERENT TYPES OF CHRONIC LIVER DISEASER01DK125730 · NIDDK · UNIVERSITY OF TEXAS MED BR GALVESTON · PI STEVENSON, HEATHER L · 2021 to 2025
$2.5M
NIDDK NIH HHS R01 DK125730
6 · The paper itself

Abstract

Background & aims: Direct-acting antivirals (DAAs) revolutionized hepatitis C (HCV) treatment. Yet, some patients present with persistent inflammation and still face adverse outcomes, including cirrhosis and hepatocellular carcinoma, despite achieving sustained virologic response (SVR). Approach & results: This study examined liver biopsies from 22 patients before and after DAA treatment to assess gene and protein expression changes linked to disease progression. Pre-treatment, patients exhibited two distinct profiles: one characterized by high pro-inflammatory and antiviral gene expression (pre-hot), and another with weaker expression (pre-cold). Patients with pre-hot profiles were initially associated with poor outcomes (OR = 14.0, 95% CI: 1.31-178.5; p = 0.049), but this lost significance after adjusting for baseline disease severity (adjusted OR = 8.04, 95% CI: 0.18-2123.07; p = 0.328). Baseline modified hepatitis activity index (MHAI) scores (OR = 1.90, 95% CI: 0.72-6.34) and fibrosis stage (OR = 1.65, 95% CI: 0.44-9.97) trended toward predicting poor outcomes but were not significant. Post-treatment, liver enzymes decreased, inflammatory scores improved, and type I interferon pathways were restored, yet 14 of 17 patients (82.3%, 95% CI: 64.2-100%) retained persistent lymphocytic infiltrates. In parallel, spectral imaging further revealed post-treatment shifts in macrophage populations, with a significant decrease in inflammatory subsets (CD14+, CD14+/Mac387+, p<0.05) and an increase in anti-inflammatory subsets (CD16+, CD16+/CD163+, CD16+/CD68+, p<0.05). Analysis of T cell-related marker expression before and after treatment shows that mixed lymphocytic infiltration (CD3+, CD4+, CD8+, CD45RO+) persists within the liver despite viral clearance, with high inter-patient variability likely limiting statistical significance. Conclusions: Even after achieving SVR and normalization of gene expression, the liver retained a heterogeneous T cell infiltrate, suggesting that persistent immune activity could continue to influence the risk of adverse outcomes.

Indexed as

Antiviral AgentsHepatitis CHepatitis C, ChronicLiverT-LymphocytesAdultAgedBiopsyDisease ProgressionFemaleGene Expression ProfilingHepacivirusHumansLiver CirrhosisMaleMiddle AgedAntiviral Agentsdirect-acting antiviralhepatic microenvironmenthepatitis C virusliversustained virologic response

Identifiers

PMID41293057
PMCPMC12640901

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.