Evidence map›Paper›PMID 41292801›Full record

ArticlebioRxiv : the preprint server for biology2025

Agentic Lab: An Agentic-physical AI system for cell and organoid experimentation and manufacturing.

Wenbo Wang, Simran Swain, Jaeyong Lee, Zuwan Lin, Bradley Canales, Almir Aljović, Yaxuan Liu, Qiang Li, Arnau Marin-Llobet, Mai Liu and 4 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Wenbo WangJohn A. Paulson School of Engineering and Applied Sciences, Harvard University, Boston, MA, USA.ORCID 0000-0002-4282-2542
Simran SwainJohn A. Paulson School of Engineering and Applied Sciences, Harvard University, Boston, MA, USA.
Jaeyong LeeJohn A. Paulson School of Engineering and Applied Sciences, Harvard University, Boston, MA, USA.
Zuwan LinJohn A. Paulson School of Engineering and Applied Sciences, Harvard University, Boston, MA, USA.
Bradley CanalesJohn A. Paulson School of Engineering and Applied Sciences, Harvard University, Boston, MA, USA.
Almir AljovićJohn A. Paulson School of Engineering and Applied Sciences, Harvard University, Boston, MA, USA.
Yaxuan LiuJohn A. Paulson School of Engineering and Applied Sciences, Harvard University, Boston, MA, USA.
Qiang LiJohn A. Paulson School of Engineering and Applied Sciences, Harvard University, Boston, MA, USA.
Arnau Marin-LlobetJohn A. Paulson School of Engineering and Applied Sciences, Harvard University, Boston, MA, USA.ORCID 0009-0008-8128-4119
Mai LiuDepartment of Cell and Developmental Biology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Zihan GaoDepartment of Cell and Developmental Biology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Ren LiuJohn A. Paulson School of Engineering and Applied Sciences, Harvard University, Boston, MA, USA.
Juan R Alvarez-DominguezDepartment of Cell and Developmental Biology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Jia LiuJohn A. Paulson School of Engineering and Applied Sciences, Harvard University, Boston, MA, USA.

Funding

VIRAL VECTOR COREP30DK019525 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI Michael R Rickels · 1986 to 2026
$48.3M
Renewal of the Human Islet Research Enhancement Center (HIREC) for the Type-1-Diabetes-Focused Human Islet Research Network (HIRN).U24DK104162 · NIDDK · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI John S. Kaddis, Joyce Carol Niland · 2019 to 2026
$12.3M
Charting human islet maturation via combined soft nanoelectronics and single-cell spatial transcriptomicsDP1DK130673 · NIDDK · HARVARD UNIVERSITY · PI LIU, JIA · 2021 to 2025
$4.3M
SCH: Al-driven Flexible Electronics for Cardiac Organoid MaturationR01LM014465 · NLM · HARVARD UNIVERSITY · PI Jie Ding, Na Li · 2023 to 2026
$1.1M
How cell maturation is regulated by circadian and metabolic rhythmsR35GM157320 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI Juan R Alvarez · 2025 to 2026
$813k
NIDDK NIH HHS DP1 DK130673NIDDK NIH HHS P30 DK019525NIDDK NIH HHS U24 DK104162NIGMS NIH HHS R35 GM157320NLM NIH HHS R01 LM014465
6 · The paper itself

Abstract

Reproducibility in biological research and manufacturing remains constrained by the complexity of multi-step protocols, fragmented data-analysis pipelines, and the intrinsic variability of experimental execution. Here, we present Agentic Lab, an agentic-physical AI platform that unifies large language model and vision language model (LLMs/VLMs)-driven reasoning with real-world laboratory operations. Agentic Lab uses multi-agent orchestration architecture, comprising of specialized subagents for knowledge retrieval, protocol design, multimodal data analysis, and training-free segmentation and representation learning for intrinsically explainable single-cell and organoid phenotyping. These agents operate under the orchestration of a virtual principal investigator MolAgent that is linked to an augmented reality (AR)-based physical AI interface, which can bridge digital reasoning with human physical execution. Agentic Lab perceives real-world experimental activities, provides context-aware instructions, identifying procedural errors in real time for humans to correct, and continuously evolves with its long-term memory database expanding through the accumulation of experimental data logs from human scientists. This interaction allows scientists and AI agents to collaborate and co-evolve dynamically, closing the loop between planning, action, and analysis in the traditional cell and organoid research lifecycle. We demonstrate Agentic Lab in organoid differentiation from human pluripotent stem cells, where it autonomously generates protocols, monitors culture procedures, and identifies subtle morphological heterogeneity linked to growth conditions. The system interprets these phenotypes, grounds them in literature, and proposes targeted instructions for improving differentiation efficiency. By combining multi-agent reasoning with physical laboratory awareness, Agentic Lab transforms experimentation and biomanufacturing from a static workflow into an adaptive, feedback-driven, bidirectional process that integrates agentic AI into the research lifecycle. This framework establishes a foundation for intelligent laboratories that integrate design, execution, and interpretation within a unified agentic-physical system.

Identifiers

PMID41292801
PMCPMC12642585

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.