Evidence map›Paper›PMID 41291642›Full record

ArticleBMC oral health2025

Metabolomic and metagenomic analyses reveal distinct microenvironmental signatures between clear aligner-associated and tooth surface dental plaque.

Qin Xie, Duo Li, Chengyan Ren, Yiheng Shen, Shiye Lin, Weihui Chen

Abstract read
In one paragraph

Article in BMC oral health, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Qin Xie *Department of Stomatology, Fujian Medical University Union Hospital, No. 29 of Xinquan Street, Gulou District, Fuzhou, 350001, China.
Duo Li *Department of Stomatology, Fujian Medical University Union Hospital, No. 29 of Xinquan Street, Gulou District, Fuzhou, 350001, China.
Chengyan RenDepartment of Oral and Maxillofacial Surgery, Fujian Medical University Union Hospital, Fuzhou, China.
Yiheng ShenSchool of Stomatology, Fujian Medical University, No. 88 of Jiaotong Street, Taijiang District, Fuzhou, 350004, China.
Shiye LinSchool of Stomatology, Fujian Medical University, No. 88 of Jiaotong Street, Taijiang District, Fuzhou, 350004, China.
Weihui ChenDepartment of Oral and Maxillofacial Surgery, Fujian Medical University Union Hospital, Fuzhou, China. whchen@fjmu.edu.cn.

Funding

the Fujian Provincial Natural Science Foundation of China No. 2023J01643
6 · The paper itself

Abstract

objectiveClear aligners (CAs) create unique oral microenvironments that may alter oral microbial metabolism, potentially increasing the risk of disease. However, metabolomic differences between CA-facing and tooth surface plaque remain unexplored. MATERIALS AND

methodsWe compared the metabolites in dental plaque from 40 participants, including 20 undergoing CA treatment. Plaque samples were collected from both CA-facing and tooth surfaces under good plaque (GP) and poor plaque (PP) control conditions. Metabolomic profiling was performed using untargeted metabolomics, followed by sparse partial least squares discriminant analysis (sPLS-DA), network analysis, pathway enrichment, and MaAsLin3 analysis. Plaque metagenomic sequencing was conducted on 20 non-CA-treated participants to further elucidate the potential mechanisms responsible for the observed metabolite changes.

resultsAmino acids, peptides, and analogues were the most common types (20.72%) among the 2502 metabolites identified. sPLS-DA demonstrated clear separation between CA-facing and tooth surface plaque metabolomes, with significant differences validated by permutational multivariate analysis of variance, particularly under PP conditions. Tooth surface plaque showed higher metabolite abundance (GP: 386 upregulated vs. 28 downregulated; PP: 570 vs. 85). Network analysis indicated stronger interactions in PP groups, especially CA-facing plaque. The plaque index was primarily the main factor driving the tooth surface metabolomic variation. In contrast, age-dominated CA-facing profiles, with site-specific responses under varying control. Integrated metagenomic–metabolomic analyses associated amino acid metabolism with dental plaque formation. Metabolites, such as 4-aminovaleric acid betaine and raffinose, positively correlated with plaque index. PP control exhibited higher microbial diversity, enriched species, and elevated D-amino acid metabolism enzymes.

conclusionsCAs create unique metabolomic microenvironments characterized by reduced metabolite diversity and altered bacterial metabolic pathways. These findings provide insights into new oral health risks with aligners and highlight the need for better plaque control during orthodontic treatment.

Indexed as

Dental PlaqueMetabolomicsMetagenomicsAmino AcidsHumansAmino AcidsClear alignerDental plaqueMetabolomicOral microenvironmentOrthodontic treatment

Identifiers

PMID41291642
PMCPMC12648904

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.