Evidence map›Paper›PMID 41291100›Full record

ArticleScientific reports2025

Dynamic DNA methylation changes during colorectal oncogenesis with insights from adenoma stages.

Alexis Overs, Chloé Molimard, Jules Durand, Frédéric Bibeau, Laurent Arnould, Franck Monnien, Claire Clavier, Christophe Borg, Michael Guittaut, Jean-Paul Feugeas and 3 more

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Targeting the Epigenome in Colorectal Cancer.International journal of molecular sciences · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Alexis OversBioinformatique et Big Data Au Service de La Santé, Centre Hospitalier Universitaire de Besançon, 3 Bd Fleming, 25000, Besançon, France. aovers@chu-besancon.fr.
Chloé MolimardAnatomie et cytologie pathologiques, Centre Hospitalier Universitaire de Besançon, 3 Bd Fleming, 25000, Besançon, France.
Jules DurandINSERM UMR1098 RIGHT, Université Marie et Louis Pasteur, Besançon, France, 25000.
Frédéric BibeauAnatomie et cytologie pathologiques, Centre Hospitalier Universitaire de Besançon, 3 Bd Fleming, 25000, Besançon, France.
Laurent ArnouldAnatomie et cytologie pathologiques, Centre Georges François Leclerc, 1 Rue du Professeur Marion, 21000, Dijon, France.
Franck MonnienAnatomie et cytologie pathologiques, Centre Hospitalier Universitaire de Besançon, 3 Bd Fleming, 25000, Besançon, France.
Claire ClavierINSERM UMR1098 RIGHT, Université Marie et Louis Pasteur, Besançon, France, 25000.
Christophe BorgOncologie médicale, Centre Hospitalier Universitaire de Besançon, 3 Bd Fleming, 25000, Besançon, France.
Michael GuittautINSERM UMR1098 RIGHT, Université Marie et Louis Pasteur, Besançon, France, 25000.
Jean-Paul FeugeasBioinformatique et Big Data Au Service de La Santé, Centre Hospitalier Universitaire de Besançon, 3 Bd Fleming, 25000, Besançon, France.
Eric HervouetINSERM UMR1098 RIGHT, Université Marie et Louis Pasteur, Besançon, France, 25000.
Paul Peixoto *INSERM UMR1098 RIGHT, Université Marie et Louis Pasteur, Besançon, France, 25000.
Zohair Selmani *INSERM UMR1098 RIGHT, Université Marie et Louis Pasteur, Besançon, France, 25000.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The dynamics of colorectal epigenetics within the adenoma stages of oncogenesis remain undocumented. In this study, we investigated DNA methylation dynamics in colorectal cancer oncogenesis from non-tumor colon tissue to low-grade, high-grade adenoma and adenocarcinoma. The methylome of 12 low-grade and 19 high-grade colorectal adenomas was determined via the EPIC v1 Human Methylation BeadChip. These methylation profiles were complemented with the methylomes of 206 non-tumor colon and 22 colon adenocarcinoma samples from the GEO and TCGA databases. Differentially methylated CpGs were identified via Student's t test and used to monitor the evolution of the colon methylome during oncogenesis. The differentially methylated promoters were used to infer the associated biological process via gene ontology and the evolution of the methylation of 34 described colorectal cancer DNA methylation biomarkers was explored. A total of 11.9% of the colon methylome was significantly altered (q < 10

Indexed as

AdenomaCarcinogenesisColorectal NeoplasmsDNA MethylationBiomarkers, TumorCpG IslandsEpigenesis, GeneticFemaleGene Expression Regulation, NeoplasticHumansMaleMiddle AgedPromoter Regions, GeneticBiomarkers, TumorBiomarkerColon adenomaColorectal cancerDNA methylationDynamicEpigeneticsOncogenesis

Identifiers

PMID41291100
PMCPMC12749741

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.