Evidence map›Paper›PMID 41291014›Full record

ArticleCommunications biology2025

Biliverdin targeting TcdB-DRBD inhibits Clostridioides difficile virulence and restores gut microbiota in Mongolian gerbils (Meriones unguiculatus).

Shuangshuang Wan, Yu Lei, Yue Jin, Runze Wang, Meng Zhang, Qikai Shi, Hui Hu, Yulei Tai, Yun Luo, Zheng Xu and 4 more

Abstract read
In one paragraph

Article in Communications biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Shuangshuang WanSchool of Laboratory Medicine and Bioengineering, Hangzhou Medical College, Hangzhou, Zhejiang, China.
Yu LeiSchool of Laboratory Medicine and Bioengineering, Hangzhou Medical College, Hangzhou, Zhejiang, China.
Yue JinSchool of Laboratory Medicine and Bioengineering, Hangzhou Medical College, Hangzhou, Zhejiang, China.
Runze WangSchool of Laboratory Medicine and Bioengineering, Hangzhou Medical College, Hangzhou, Zhejiang, China.ORCID http://orcid.org/0009-0000-0204-9906
Meng ZhangSchool of Laboratory Medicine and Bioengineering, Hangzhou Medical College, Hangzhou, Zhejiang, China.
Qikai ShiSchool of Laboratory Medicine and Bioengineering, Hangzhou Medical College, Hangzhou, Zhejiang, China.
Hui HuSchool of Laboratory Medicine and Bioengineering, Hangzhou Medical College, Hangzhou, Zhejiang, China.
Yulei TaiSchool of Laboratory Medicine and Bioengineering, Hangzhou Medical College, Hangzhou, Zhejiang, China.
Yun LuoSchool of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, NSW, Australia.ORCID http://orcid.org/0000-0001-7713-4849
Zheng XuSchool of Laboratory Medicine and Bioengineering, Hangzhou Medical College, Hangzhou, Zhejiang, China.
Rong KuangNMPA Key Laboratory for Animal Alternative Testing Technology of Cosmetics, Zhejiang Institute for Food and Drug Control, Hangzhou, China.
Xiaojun SongLaboratory Medicine Center, Department of Clinical Laboratory, Zhejiang Provincial People's Hospital, Hangzhou Medical College, Hangzhou, Zhejiang, China.
Yu ChenSchool of Laboratory Medicine and Bioengineering, Hangzhou Medical College, Hangzhou, Zhejiang, China.
Dazhi JinSchool of Laboratory Medicine and Bioengineering, Hangzhou Medical College, Hangzhou, Zhejiang, China. jind@hmc.edu.cn.ORCID http://orcid.org/0000-0002-2613-7844

Funding

National Natural Science Foundation of China (National Science Foundation of China) 82372299Natural Science Foundation of Zhejiang Province (Zhejiang Provincial Natural Science Foundation) LXZ22H300001
6 · The paper itself

Abstract

The incidence of Clostridioides difficile infection (CDI) has been rising globally in recent years. Treating CDI is complicated by antibiotic-induced disruption of the normal gut microbiota, which promotes CDI recurrence and increases the risk of therapeutic failure. We used an AI-assisted approach to screen small molecule inhibitors targeting the receptor binding domain of toxin B (TcdB). Biliverdin (BV) had strong binding affinities with all TcdB variants. In vitro results showed that BV exhibited no cytotoxic effects on cells and didn't affect growth of C. difficile, yet markedly suppressed cytotoxic effects induced by TcdB1-4. Encapsulating BV in intestinal epithelial cell-derived extracellular vesicles (I-EVs) significantly recovered body weight, enhanced survival rate, reduced TcdB load, and alleviated intestinal lesions in treated gerbils. Notably, BV treatment not only restored the abundance of gut microbiota but also significantly increased the quantity of gut-beneficial Firmicutes. BV also exerted its anti-CDI effect by restoring the short-chain fatty acid metabolic network. Our findings indicate that BV shows promise as a natural small-molecule therapeutic that attenuates broad-spectrum TcdB-induced injuries, highlighting its potential for clinical translation in CDI treatment.

Indexed as

Bacterial ProteinsBacterial ToxinsBiliverdineClostridioides difficileClostridium InfectionsGastrointestinal MicrobiomeAnimalsAnti-Bacterial AgentsGerbillinaeMaleVirulenceAnti-Bacterial AgentsBacterial ProteinsBacterial ToxinsBiliverdinetoxB protein, Clostridium difficile

Identifiers

PMID41291014
PMCPMC12647718

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.